Publications
The following publications were published exclusively under the affiliation of the Max Planck Society. For publications by the principal investigator outside of the Max Planck Society, see the links on the lower left.
Publications by Malte Spielmann at the MPI for Molecular Genetics
Preprints
If preprints are available, they will be listed here.
HiFi sequencing accurately identifies clinically relevant variants in paralogous genes. medRxiv: the preprint server for health sciences (2025)
Published
2025
Preprint
HiFi sequencing accurately identifies clinically relevant variants in paralogous genes. medRxiv: the preprint server for health sciences (2025)
Review Article
Structural variants in the 3D genome as drivers of disease. Nature Reviews Genetics (2025)
2024
Journal Article
Structural Variants at the LMNB1 Locus: Deciphering Pathomechanisms in Autosomal Dominant Adult-Onset Demyelinating Leukodystrophy. Annals of Neurology 96 (5), pp. 855 - 870 (2024)
Journal Article
LINE1-mediated epigenetic repression of androgen receptor transcription causes androgen insensitivity syndrome. Scientific Reports 14 (1), Article 16302 (2024)
Thesis - PhD
Single cell sequencing as a phenotyping strategy to decipher the molecular mechanisms of developmental disorders. Dissertation, 128 Seiten pp. (2024)
Journal Article
A single-cell time-lapse of mouse prenatal development from gastrula to birth. Nature 626 (8001), pp. 1084 - 1093 (2024)
Journal Article
STIGMA: Single-cell tissue-specific gene prioritization using machine learning. The American Journal of Human Genetics 111 (2), pp. 338 - 349 (2024)
2023
Journal Article
Single-cell, whole-embryo phenotyping of mammalian developmental disorders. Nature 623 (7988), pp. 772 - 781 (2023)
Journal Article
AML with complex karyotype: extreme genomic complexity revealed by combined long-read sequencing and Hi-C technology. Blood Advances 7 (21), pp. 6520 - 6531 (2023)
Journal Article
Enhancer hijacking at the ARHGAP36 locus is associated with connective tissue to bone transformation. Nature Communications 14 (1), 2034 (2023)
Journal Article
Combinatorial effects on gene expression at the Lbx1/Fgf8 locus resolve Split-Hand/Foot Malformation type 3. Nature Communications 14 (1), Article 1475 (2023)
Journal Article
Aberrant phase separation and nucleolar dysfunction in rare genetic diseases. Nature 614 (7948), pp. 564 - 571 (2023)
Journal Article
Single-cell RNA-based phenotyping reveals a pivotal role of thyroid hormone receptor alpha for hypothalamic development. Development 150 (3), Article dev201228 (2023)
2022
Journal Article
Integration of Hi-C with short and long-read genome sequencing reveals the structure of germline rearranged genomes. Nature Communications 13 (1), 6470 (2022)
Journal Article
Alternative splicing of BUD13 determines the severity of a developmental disorder with lipodystrophy and progeroid features. GENETICS IN MEDICINE 24 (9), pp. 1927 - 1940 (2022)
Journal Article
Single-cell sequencing of human midbrain reveals glial activation and a Parkinson-specific neuronal state. Brain 145 (3), pp. 964 - 978 (2022)
2021
Journal Article
Complete lung agenesis caused by complex genomic rearrangements with neo-TAD formation at the SHH locus. Human Genetics 140 (10), pp. 1459 - 1469 (2021)
Journal Article
Position effects at the FGF8 locus are associated with femoral hypoplasia. The American Journal of Human Genetics 108 (9), pp. 1725 - 1734 (2021)
Journal Article
Single-cell profiling for advancing birth defects research and prevention. Birth Defects Research 113 (7), pp. 546 - 559 (2021)
Journal Article
Non-coding deletions identify Maenli lncRNA as a limb-specific En1 regulator. Nature 592 (7852), pp. 93 - 98 (2021)
2020
Journal Article
A human cell atlas of fetal gene expression. Science 370 (6518), eaba7721 (2020)
Conference Paper
Integration of Hi-C and Nanopore Sequencing for Structural Variant Analysis in AML with a Complex Karyotype: (Chromothripsis)². 62nd Annual Meeting and Exposition of the American Society of Hematology (ASH) (Virtual meeting), December 05, 2020 - December 08, 2020. Blood 136, Article 28, (2020)
Journal Article
Efficiency of Computer-Aided Facial Phenotyping (DeepGestalt) in Individuals With and Without a Genetic Syndrome: Diagnostic Accuracy Study. Journal of Medical Internet Research (JMIR) 22 (10), e19263 (2020)
Preprint
Single-cell sequencing of the human midbrain reveals glial activation and a neuronal state specific to Parkinson’s disease. medRxiv (2020)
Journal Article
Hi-C Identifies Complex Genomic Rearrangements and TAD-Shuffling in Developmental Diseases. The American Journal of Human Genetics 106 (6), pp. 872 - 884 (2020)
2018
Journal Article
Response to Peron et al. GENETICS IN MEDICINE 20, pp. 1481 - 1482 (2018)
Journal Article
Dynamic 3D chromatin architecture contributes to enhancer specificity and limb morphogenesis. Nature Genetics 50 (10), pp. 1463 - 1473 (2018)
Journal Article
Structural variation in the 3D genome. Nature Reviews Genetics 19 (7), pp. 453 - 467 (2018)
Journal Article
Noncoding copy-number variations are associated with congenital limb malformation. GENETICS IN MEDICINE 20 (6), pp. 599 - 607 (2018)
2017
Journal Article
Mutations in MYO1H cause a recessive form of central hypoventilation with autonomic dysfunction. Journal of Medical Genetics 54 (11), pp. 754 - 761 (2017)
2016
Journal Article
Formation of novel chromatin domains determines pathogenicity of genomic duplications. Nature 538 (7624), pp. 265 - 269 (2016)
Journal Article
Looking beyond the genes: the role of non-coding variants in human disease. Human Molecular Genetics 25 (R2), pp. R157 - R165 (2016)
Journal Article
Duplication of PTHLH causes osteochondroplasia with a combined brachydactyly type E/A1 phenotype with disturbed bone maturation and rhizomelia. European journal of human genetics 24 (8), pp. 1132 - 1136 (2016)
Journal Article
Femoral facial syndrome associated with a de novo complex chromosome 2q37 rearrangement. American Journal of Medical Genetics Part A 170A (5), pp. 1202 - 1207 (2016)
Journal Article
Breaking TADs: How Alterations of Chromatin Domains Result in Disease. Trends in Genetics 32 (4), pp. 225 - 237 (2016)
Journal Article
A homozygous HOXD13 missense mutation causes a severe form of synpolydactyly with metacarpal to carpal transformation. American Journal of Medical Genetics Part A 170 (3), pp. 615 - 621 (2016)
Journal Article
Exome Sequencing and CRISPR/Cas Genome Editing Identify Mutations of ZAK as a Cause of Limb Defects in Humans and Mice. Genome Research 26 (2), pp. 183 - 191 (2016)
2015
Journal Article
FGFR2 mutation in a patient without typical features of Pfeiffer syndrome--The emerging role of combined NGS and phenotype based strategies. European Journal of Medical Genetics 58 (8), pp. 376 - 380 (2015)
Journal Article
Comparison of Exome and Genome Sequencing Technologies for the Complete Capture of Protein-Coding Regions. Human Mutations 36 (8), pp. 815 - 822 (2015)
Journal Article
Microdeletions on 6p22.3 are associated with mesomelic dysplasia Savarirayan type. Journal of Medical Genetics 52 (7), pp. 476 - 483 (2015)
Journal Article
Somatic neurofibromatosis type 1 (NF1) inactivation events in cutaneous neurofibromas of a single NF1 patient. European journal of human genetics 23 (6), pp. 1870 - 1873 (2015)
Journal Article
Disruptions of Topological Chromatin Domains Cause Pathogenic Rewiring of Gene-Enhancer Interactions. Cell 161 (5), pp. 1012 - 1025 (2015)
Journal Article
Deletions, Inversions, Duplications: Engineering of Structural Variants using CRISPR/Cas in Mice. Cell Reports 10 (5), pp. 833 - 839 (2015)
2014
Journal Article
Homozygous and compound-heterozygous mutations in TGDS cause Catel-Manzke syndrome. The American Journal of Human Genetics 95 (6), pp. 763 - 770 (2014)
Journal Article
Microduplications encompassing the Sonic hedgehog limb enhancer ZRS are associated with Haas-type polysyndactyly and Laurin-Sandrow syndrome. Clinical Genetics: an international journal of genetics in medicine 86 (4), pp. 318 - 325 (2014)
Journal Article
Deletions of chromosomal regulatory boundaries are associated with congenital disease. Genome Biology: Biology for the Post-Genomic Era 15, 15:423 (2014)
Journal Article
Effective diagnosis of genetic disease by computational phenotype analysis of the disease-associated genome. Science Translational Madicine 6 (252), 252ra123 (2014)
Journal Article
Deletions of exons with regulatory activity at the DYNC1I1 locus are associated with split-hand/split-foot malformation: array CGH screening of 134 unrelated families. Orphanet Journal of Rare Diseases 2014, 9:108 (2014)
2012
Journal Article
Homeotic arm-to-leg transformation associated with genomic rearrangements at the PITX1 locus. American Journal of Human Genetics 91 (4), pp. 629 - 635 (2012)
2011
Journal Article
Homozygous deletion of chromosome 15q13.3 including CHRNA7 causes severe mental retardation, seizures, muscular hypotonia, and the loss of KLF13 and TRPM1 potentially cause macrocytosis and congenital retinal dysfunction in siblings. Eur J Med Genet 54 (4), pp. e441 - 5 (2011)
Publications by Firstname Lastname before 20nm [year before MPIMG affiliation]
Comparative single-cell analyses reveal evolutionary repurposing of a conserved gene program in bat wing development. bioRxiv: the preprint server for biology (2024)
Zur Theorie des Gesetzes der Energieverteilung im Normalspektrum.
Verhandl. Dtsch. Phys. Ges. Band 2, 1900, S. 237–245