Publications of Martin Vingron
All genres
Journal Article (203)
21.
Journal Article
178 (1), e29, pp. 242 - 260 (2019)
The Translational Landscape of the Human Heart. Cell 22.
Journal Article
2019, 528877 (2019)
Preformed Chromatin Topology Assists Transcriptional Robustness of Shh during Limb Development. bioRxiv (Preprint Server) 23.
Journal Article
15 (5), e8339 (2019)
Linking aberrant chromatin features in chronic lymphocytic leukemia to transcription factor networks. Molecular Systems Biology 24.
Journal Article
20, 157 (2019)
Predicting enhancers in mammalian genomes using supervised hidden Markov models. BMC Bioinformatics 25.
Journal Article
35 (6), pp. 1009 - 1017 (2019)
The Distance Precision Matrix: computing networks from non-linear relationships. Bioinformatics 26.
Journal Article
21 (3), pp. 305 - 310 (2019)
Serial genomic inversions induce tissue-specific architectural stripes, gene misexpression and congenital malformations. Nature Cell Biology 27.
Journal Article
23 (6), pp. 900 - 904 (2018)
Esrrb Unlocks Silenced Enhancers for Reprogramming to Naive Pluripotency - Correction. Cell Stem Cell 28.
Journal Article
16 (1), 138 (2018)
Classifying human promoters by occupancy patterns identifies recurring sequence elements, combinatorial binding, and spatial interactions. BMC Biology 29.
Journal Article
14 (11), e1007793 (2018)
Synthetic STARR-seq reveals how DNA shape and sequence modulate transcriptional output and noise. PLoS Genetics 30.
Journal Article
50 (10), pp. 1463 - 1473 (2018)
Dynamic 3D chromatin architecture determines enhancer specificity and morphogenetic identity in limb development. Nature Genetics 31.
Journal Article
24 (10), pp. 2784 - 2794 (2018)
Dynamics of Transcription Regulation in Human Bone Marrow Myeloid Differentiation to Mature Blood Neutrophils. Cell Reports 32.
Journal Article
14 (8), e1006372 (2018)
coTRaCTE predicts co-occurring transcription factors within cell-type specific enhancers. PLoS Computational Biology 33.
Journal Article
23 (2), pp. 266 - 275 (2018)
Esrrb Unlocks Silenced Enhancers for Reprogramming to Naive Pluripotency. Cell Stem Cell 34.
Journal Article
10 (1), 10:55 (2018)
Epigenomic profiling of non-small cell lung cancer xenografts uncover LRP12 DNA methylation as predictive biomarker for carboplatin resistance. Genome Medicine 35.
Journal Article
50 (5), pp. 662 - 667 (2018)
Polymer physics predicts the effects of structural variants on chromatin architecture. Nature Genetics 36.
Journal Article
46 (6), pp. 2868 - 2882 (2018)
Genomic dissection of enhancers uncovers principles of combinatorial regulation and dynamic wiring of enhancer-promoter contacts. Nucleic Acids Research (London) 37.
Journal Article
9 (1), 1048 (2018)
Integrative genomic profiling of large-cell neuroendocrine carcinomas reveals distinct subtypes of high-grade neuroendocrine lung tumors. Nature Communications 38.
Journal Article
33 (24), pp. 3929 - 3937 (2017)
An improved compound Poisson model for the number of motif hits in DNA sequences. Bioinformatics 39.
Journal Article
45 (19), pp. 11004 - 11018 (2017)
ssHMM: extracting intuitive sequence-structure motifs from high-throughput RNA-binding protein data. Nucleic Acids Research (London) 40.
Journal Article
86 (4), pp. 184 - 195 (2017)
Stochastics of Cellular Differentiation Explained by Epigenetics: The Case of T-Cell Differentiation and Functional Plasticity. Scand J Immunol