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Journal Article (18)

  1. 1.
    Journal Article
    Zi, Z.: Molecular Engineering of the TGF-β Signaling Pathway. Journal of Molecular Biology (London) 431 (15), pp. 2644 - 2654 (2019)
  2. 2.
    Journal Article
    Han, H.; Wu, G.; Li, Y.; Zi, Z.: eDetect: A Fast Error Detection and Correction Tool for Live Cell Imaging Data Analysis. iScience 13 (2019)
  3. 3.
    Journal Article
    van Jaarsveld, M.; Deng, D.; Wiemer, E. A. C.; Zi, Z.: Tissue-Specific Chk1 Activation Determines Apoptosis by Regulating the Balance of p53 and p21. iScience 12 (2019)
  4. 4.
    Journal Article
    Li, Y.; Lee, M.; Kim, N.; Wu, G.; Deng, D.; Kim, J. M.; Liu, X.; Heo, W. D.; Zi, Z.: Spatiotemporal Control of TGF-β Signaling with Light. ACS Synthetic Biology 7 (2), pp. 443 - 451 (2018)
  5. 5.
    Journal Article
    Huang, X.; Zi, Z.: Inferring cellular regulatory networks with Bayesian model averaging for linear regression (BMALR). Molecular BioSystems 10 (8), pp. 2023 - 2030 (2014)
  6. 6.
    Journal Article
    Rigbolt, K. T. G.; Zarei, M.; Sprenger, A.; Becker, A. C.; Diedrich, B.; Huang, X.; Eiselein, S.; Kristensen, A. R.; Gretzmeier, C.; Andersen, J. S. et al.; Zi, Z.; Dengjel, J.: Characterization of early autophagy signaling by quantitative phosphoproteomics. Autophagy 10 (2), pp. 356 - 371 (2014)
  7. 7.
    Journal Article
    Zi, Z.; Chapnick, D. A.; Liu, X.: Dynamics of TGF-β/Smad signaling. FEBS Letters 586 (14), pp. 1921 - 1928 (2012)
  8. 8.
    Journal Article
    Adrover, M. À.; Zi, Z.; Duch, A.; Schaber, J.; González-Novo, A.; Jimenez, J.; Nadal-Ribelles, M.; Clotet, J.; Klipp, E.; Posas, F.: Time-dependent quantitative multicomponent control of the G1-S network by the stress-activated protein kinase Hog1 upon osmostress. Science Signaling 4 (192), p. ra63 (2011)
  9. 9.
    Journal Article
    Zi, Z.; Feng, Z.; Chapnick, D. A.; Dahl, M.; Deng, D.; Klipp, E.; Moustakas, A.; Liu, X.: Quantitative analysis of transient and sustained transforming growth factor-β signaling dynamics. Molecular Systems Biology 2011 (7) (2011)
  10. 10.
    Journal Article
    Zi, Z.: Sensitivity analysis approaches applied to systems biology models. IET Systems Biology 5 (6), pp. 336 - 346 (2011)
  11. 11.
    Journal Article
    Zi, Z.: SBML-PET-MPI: a parallel parameter estimation tool for Systems Biology Markup Language based models. Bioinformatics 27 (7), pp. 1028 - 1029 (2011)
  12. 12.
    Journal Article
    Zi, Z.; Liebermeister, W.; Klipp, E.: A quantitative study of the Hog1 MAPK response to fluctuating osmotic stress in Saccharomyces cerevisiae. A Quantitative Study of the Hog1 MAPK Response to Fluctuating Osmotic Stress in Saccharomyces cerevisiae 5 (3) (2010)
  13. 13.
    Journal Article
    Zi, Z.; Zheng, Y.; Rundell, A. E.; Klipp, E.: A systems biology markup language (SBML) based sensitivity analysis tool. BMC Bioinformatics 15 (9), p. 342 - 342 (2008)
  14. 14.
    Journal Article
    Zi, Z.; Klipp, E.: Cellular signaling is potentially regulated by cell density in receptor trafficking networks. FEBS Letters 581 (24), pp. 4589 - 4595 (2007)
  15. 15.
    Journal Article
    Zi, Z.; Klipp, E.: Constraint-based modeling and kinetic analysis of the smad dependent TGF-ß signaling pathway. PLoS One 2 (9), p. e936 - e936 (2007)
  16. 16.
    Journal Article
    Zi, Z.; Klipp, E.: Steady state analysis of signal response in receptor trafficking networks. Genome Informatics Series (GIS) 18 (1), pp. 100 - 108 (2007)
  17. 17.
    Journal Article
    Zi, Z.; Klipp, E.: SBML-PET: a Systems Biology Markup Language-based parameter estimation tool. Bioinformatics 22 (21), pp. 2704 - 2705 (2006)
  18. 18.
    Journal Article
    Zi, Z.; Cho, K.-H.; Sung, M.-H.; Xia, X.; Zheng, J.; Sun, Z.: In silico identification of the key components and steps in IFN-γ induced JAK-STAT signaling pathway. FEBS Letters 579 (5), pp. 1101 - 1108 (2005)

Book Chapter (2)

  1. 19.
    Book Chapter
    Feng, Z.; Zi, Z.; Liu, X.: Measuring TGF-β Ligand Dynamics in Culture Medium. In: TGF-β Signaling: methods and protocols (Eds. Feng, X.-H.; Xu, P.; Lin, X.) (2016)
  2. 20.
    Book Chapter
    Zi, Z.: A Tutorial on Mathematical Modeling of Biological Signaling Pathways. In: Computational Modeling of Signaling Networks, pp. 41 - 51 (Eds. Liu, X.; Betterton, M. D.). Humana Press (2012)
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