Publikationen von Martin Vingron

Stephan R. Starick, Jonas Ibn-Salem, Marcel Jurk, Céline Hernandez, Michael I. Love, Ho-Ryun Chung, Martin Vingron, Morgane Thomas-Chollier, and Sebastian H. Meijsing, "ChIP-exo signal associated with DNA-binding motifs provides insight into the genomic binding of the glucocorticoid receptor and cooperating transcription factors," Genome Res 25 (6), 825-835 (2015).

S. Schafer, E. Adami, M. Heinig, K. E. Rodrigues, F. Kreuchwig, J. Silhavy, S. van Heesch, D. Simaite, N. Rajewsky, E. Cuppen, M. Pravenec, M. Vingron, S. A. Cook, and N. Hubner, "Translational regulation shapes the molecular landscape of complex disease phenotypes," Nat Commun 6, 6:7200 (2015).

Lynnette Fernandez-Cuesta, Ruping Sun, Roopika Menon, Julie George, Susanne Lorenz, Leonardo A. Meza-Zepeda, Martin Peifer, Dennis Plenker, Johannes M. Heuckmann, Frauke Leenders, Thomas Zander, Ilona Dahmen, Mirjam Koker, Jakob Schöttle, Roland T. Ullrich, Janine Altmüller, Christian Becker, Peter Nürnberg, Henrik Seidel, Diana Böhm, Friederike Göke, Sascha Ansen, Prudence A. Russell, Gavin M. Wright, Zoe Wainer, Benjamin Solomon, Iver Petersen, Joachim H. Clement, Jörg Sänger, Odd Terje Brustugun, Aslaug Helland, Steinar Solberg, Marius Lund-Iversen, Reinhard Büttner, Jürgen Wolf, Elisabeth Brambilla, Martin Vingron, Sven Perner, Stefan A. Haas, and Roman K. Thomas, "Identification of novel fusion genes in lung cancer using breakpoint assembly of transcriptome sequencing data," Genome Biology: Biology for the Post-Genomic Era 16, 16:7 (2015).

M. Heinig, M. Colome-Tatche, A. Taudt, C. Rintisch, S. Schafer, M. Pravenec, N. Hubner, M. Vingron, and F. Johannes, "histoneHMM: Differential analysis of histone modifications with broad genomic footprints," BMC Bioinformatics 16, 16:60 (2015).

Juliane Perner, Julia Lasserre, Sarah Kinkley, Martin Vingron, and Ho-Ryun Chung, "Inference of interactions between chromatin modifiers and histone modifications: from ChIP-Seq data to chromatin-signaling," Nucleic Acids Research (London) 42 (22), 13689-13695 (2014).

Navodit Misra, Ewa Szczurek, and Martin Vingron, "Inferring the paths of somatic evolution in cancer," Bioinformatics 30 (17), 2456-2463 (2014).

G. Meng and M. Vingron, "Condition-specific target prediction from motifs and expression," Bioinformatics 30 (12), 1643-1650 (2014).

Xianbin Yu, Guangyong Zheng, Lanlan Shan, Guofeng Meng, Martin Vingron, Qi Liu, and Xin-Guang Zhu, "Reconstruction of gene regulatory network related to photosynthesis in Arabidopsis thaliana," Frontiers in Plant Science 5, 5:273-5:273 (2014).

C. Rintisch, M. Heinig, A. Bauerfeind, S. Schafer, C. Mieth, G. Patone, O. Hummel, W. Chen, S. Cook, E. Cuppen, M. Colome-Tatche, F. Johannes, R. C. Jansen, H. Neil, M. Werner, M. Pravenec, M. Vingron, and N. Hubner, "Natural variation of histone modification and its impact on gene expression in the rat genome," Genome Research 24 (6), 942-953 (2014).

L. Fernandez-Cuesta, D. Plenker, H. Osada, R. Sun, R. Menon, F. Leenders, S. Ortiz-Cuaran, M. Peifer, M. Bos, J. Dassler, F. Malchers, J. Schöttle, W. Vogel, I. Dahmen, M. Koker, R. T. Ullrich, G. M. Wright, P. A. Russell, Z. Wainer, B. Solomon, E. Brambilla, H. Nagy-Mignotte, D. Moro-Sibilot, C. G. Brambilla, S. Lantuejoul, J. Altmüller, C. Becker, P. Nürnberg, J. M. Heuckmann, E. Stoelben, I. Petersen, J. H. Clement, J. Sänger, L. A. Muscarella, A. la Torre, V. M. Fazio, I. Lahortiga, T. Perera, S. Ogata, M. Parade, D. Brehmer, M. Vingron, L. C. Heukamp, R. Buettner, T. Zander, J. Wolf, S. Perner, S. Ansen, S. A. Haas, Y. Yatabe, and R. K. Thomas, "CD74-NRG1 Fusions in Lung Adenocarcinoma," Cancer Discovery 4 (4), 415-422 (2014).

L. Fernandez-Cuesta, M. Peifer, X. Lu, R. Sun, L. Ozretic, D. Seidel, T. Zander, F. Leenders, J. George, C. Müller, I. Dahmen, B. Pinther, G. Bosco, K. Konrad, J. Altmüller, P. Nürnberg, V. Achter, U. Lang, P. M. Schneider, M. Bogus, A. Soltermann, O. T. Brustugun, A. Helland, S. Solberg, M. Lund-Iversen, S. Ansen, E. Stoelben, G. M. Wright, P. Russell, Z. Wainer, B. Solomon, J. K. Field, R. Hyde, M. P. Davies, L. C. Heukamp, I. Petersen, S. Perner, C. M. Lovly, F. Cappuzzo, W. D. Travis, J. Wolf, M. Vingron, E. Brambilla, S. A. Haas, R. Buettner, and R. K. Thomas, "Frequent mutations in chromatin-remodelling genes in pulmonary carcinoids," Nature Communications 5, 5:3518 (2014).

E. Szczurek, N. Misra, and M. Vingron, "Synthetic sickness or lethality points at candidate combination therapy targets in glioblastoma," International Journal of Cancer 133 (9), 2123-2132 (2013).

M. Thomas-Chollier, L. C. Watson, S. B. Cooper, M. A. Pufall, J. S. Liu, K. Borzym, M. Vingron, K. R. Yamamoto, and S. H. Meijsing, "A naturally occuring insertion of a single amino acid rewires transcriptional regulation by glucocorticoid receptor isoforms," Proceedings of the National Academy of Sciences of the United States of America 110 (44), 17826-17831 (2013).

Alessandro Mammana, Martin Vingron, and Ho-Ryun Chung, "Inferring nucleosome positions with their histone mark annotation from ChIP data," Bioinformatics 29 (20), 2547-2554 (2013).

Annalisa Marsico, Matthew Huska, Julia Lasserre, Haiyang Hu, Dubravka Vucicevic, Anne Musahl, Ulf Andersson Ørom, and Martin Vingron, "PROmiRNA: a new miRNA promoter recognition method uncovers the complex regulation of intronic miRNAs," Genome Biology 14 (8), R84-R84 (2013).

J. Göke, Y. S. Chan, J. L. Yan, M. Vingron, and H. H. Ng, "Genome-wide Kinase-Chromatin Interactions Reveal the Regulatory Network of ERK Signaling in Human Embryonic Stem Cells," Molecular Cell 50 (6), 844-855 (2013).

Radmila Feldmann, Cornelius Fischer, Vitam Kodelja, Sarah Behrens, Stefan Haas, Martin Vingron, Bernd Timmermann, Anne Geikowski, and Sascha Sauer, "Genome-wide analysis of LXRalpha activation reveals new transcriptional networks in human atherosclerotic foam cells," Nucleic Acids Research (London) 41 (6), 3518-3531 (2013).

Radmila Feldmann, Cornelius Fischer, Vitam Kodelja, Sarah Behrens, Stefan Haas, Martin Vingron, Bernd Timmermann, Anne Geikowski, and Sascha Sauer, "Genome-wide analysis of LXRα activation reveals new transcriptional networks in human atherosclerotic foam cells," Nucleic Acids Research (London) 41 (6), 3518-3531 (2013).

M. T. Weirauch, A. Cote, R. Norel, M. Annala, Y. Zhao, T. R. Riley, J. Saez-Rodriguez, T. Cokelaer, A. Vedenko, S. Talukder, Dream Consortium, P. Agius, A. Arvey, P. Bucher, C. G., Jr. Callan, C. W. Chang, C. Y. Chen, Y. S. Chen, Y. W. Chu, J. Grau, I. Grosse, V. Jagannathan, J. Keilwagen, S. M. Kielbasa, J. B. Kinney, H. Klein, M. B. Kursa, H. Lahdesmaki, K. Laurila, C. Lei, C. Leslie, C. Linhart, A. Murugan, A. Mysickova, W. S. Noble, M. Nykter, Y. Orenstein, S. Posch, J. Ruan, W. R. Rudnicki, C. D. Schmid, R. Shamir, W. K. Sung, M. Vingron, Z. Zhang, H. J. Bussemaker, Q. D. Morris, M. L. Bulyk, G. Stolovitzky, and T. R. Hughes, "Evaluation of methods for modeling transcription factor sequence specificity," Nature biotechnology 31 (2), 126-34 (2013).

Julia Lasserre, Ho-Ryun Chung, and Martin Vingron, "Finding Associations among Histone Modifications Using Sparse Partial Correlation Networks," PLoS Computational Biology 9 (9), e1003168-e1003168 (2013).