Publikationen von M. Vingron

W. Kopp and M. Vingron, "An improved compound Poisson model for the number of motif hits in DNA sequences," Bioinformatics 33 (24), 3929-3937 (2017).

D. Heller, R. Krestel, U. Ohler, M. Vingron, and A. Marsico, "ssHMM: extracting intuitive sequence-structure motifs from high-throughput RNA-binding protein data," Nucleic Acids Research (London) 45 (19), 11004-11018 (2017).

J. Bhat, J. Helmuth, G. Chitadze, L. Kouakanou, C. Peters, M. Vingron, O. Ammerpohl, and D. Kabelitz, "Stochastics of Cellular Differentiation Explained by Epigenetics: The Case of T-Cell Differentiation and Functional Plasticity," Scand J Immunol 86 (4), 184-195 (2017).

A. J. Will , G. Cova, M. Osterwalder, W. L. Chan, L. Wittler, N. Brieske, V. Heinrich, J. P. de Villartay, M. Vingron, E. Klopocki, A. Visel, D. G. Lupianez, and S. Mundlos, "Composition and dosage of a multipartite enhancer cluster control developmental expression of Ihh (Indian hedgehog)," Nature Genetics 49 (10), 1539-1545 (2017).

Jun Yang, Mohammad Hossein Moeinzadeh, Heiner Kuhl, Johannes Helmuth, Peng Xiao, Stefan Haas, Guiling Liu, Jianli Zheng, Zhe Sun, Weijuan Fan, Gaifang Deng, Hongxia Wang, Fenhong Hu, Shanshan Zhao, Alisdair R. Fernie, Stefan T. Börno, Bernd Timmermann, Peng Zhang, and Martin Vingron, "Haplotype-resolved sweet potato genome traces back its hexaploidization history," Nature Plants 2017 (3), 696-703 (2017).

M. I. Love, M. Huska, M. Jurk, R. Schöpflin, S. R. Starick, K. Schwahn, S. B. Cooper, K. R. Yamamoto, M. Thomas-Chollier, M. Vingron, and S. H. Meijsing, "Role of the chromatin landscape and sequence in determining cell type-specific genomic glucocorticoid receptor binding and gene regulation," Nucleic Acids Research (London) 45 (4), 1805-1819 (2017).

Guillaume Andrey, Robert Schöpflin, Ivana Jerković, Verena Heinrich, Daniel Ibrahim, Christina Paliou, Myriam Hochradel, Bernd Timmermann, Stefan Haas, Martin Vingron, and Stefan Mundlos, "Characterization of hundreds of regulatory landscapes in developing limbs reveals two regimes of chromatin folding," Genome Research 27 (2), 223-233 (2017).

Martin Franke, Daniel Ibrahim, Guillaume Andrey, Wibke Schwarzer, Verena Heinrich, Robert Schöpflin, Katerina Kraft, Rieke Kempfer, Ivana Jerković, Wing-Lee Chan, Malte Spielmann, Bernd Timmermann, Lars Wittler, Ingo Kurth, Paola Cambiaso, Orsetta Zuffardi, Gunnar Houge, Lindsay Lambie, Francesco Brancati, Ana Pombo, Martin Vingron, Francois Spitz, and Stefan Mundlos, "Formation of novel chromatin domains determines pathogenicity of genomic duplications," Nature 538 (7624), 265-269 (2016).

I. Du Bois, A. Marsico, W. Bertrams, M. R. Schweiger, B. Caffrey, A. Sittka-Stark, M. Eberhardt, J. Vera, M. Vingron, and B. T. Schmeck, "Genome-wide Chromatin Profiling of Legionella pneumophila-Infected Human Macrophages Reveals Activation of the Probacterial Host Factor TNFAIP2," The Journal of Infectious Diseases 214 (3), 454-463 (2016).

D. Juan, J. Perner, E. Carrillo de Santa Pau, S. Marsili, D. Ochoa, H. R. Chung, M. Vingron, D. Rico, and A. Valencia, "Epigenomic Co-localization and Co-evolution Reveal a Key Role for 5hmC as a Communication Hub in the Chromatin Network of ESCs," Cell Reports 14 (5), 1246-1257 (2016).

S. Ancherbak, E. E. Kuruoglu, and M. Vingron, "Time-Dependent Gene Network Modelling by Sequential Monte Carlo," IEEE ACM Transactions on Computational Biology and Bioinformatics 13 (6), 1183-1193 (2016).

H. Hu, S. A. Haas, J. Chelly, H. Van Esch, M. Raynaud, A. P. M. de Brouwer, S. Weinert, G. Froyen, S. G. M. Frints, F. Laumonnier, T. Zemojtel, M. I. Love, H. Richard, A.-K. Emde, M. Bienek, C. Jensen, M. Hambrock, U. Fischer, C. Langnick, M. Feldkamp, W. Wissink-Lindhout, N. Lebrun, L. Castelnau, J. Rucci, R. Montjean, O. Dorseuil, P. Billuart, T. Stuhlmann, M. Shaw, M. A. Corbett, A. Gardner, S. Willis-Owen, C. Tan, K. L. Friend, S. Belet, K. E. P. van Roozendaal, M. Jimenez-Pocquet, M.-P. Moizard, N. Ronce, R. Sun, S. O'Keeffe, R. Chenna, A. van Bömmel, J. Göke, A. Hackett, M. Field, L. Christie, J. Boyle, E. Haan, J. Nelson, G. Turner, G. Baynam, G. Gillessen-Kaesbach, U. Müller, D. Steinberger, B. Budny, M. Badura-Stronka, A. Latos-Bieleńska, L. B. Ousager, P. Wieacker, G. Rodríguez Criado, M.-L. Bondeson, G. Annerén, A. Dufke, M. Cohen, L. Van Maldergem, C. Vincent-Delorme, B. Echenne, B. Simon-Bouy, T. Kleefstra, M. Willemsen, J.-P. Fryns, K. Devriendt, R. Ullmann, M. Vingron, K. Wrogemann, T. F. Wienker, A. Tzschach, H. van Bokhoven, J. Gecz, T. J. Jentsch, W. Chen, H.-H. Ropers, and V. M. Kalscheuer, "X-exome sequencing of 405 unresolved families identifies seven novel intellectual disability genes," Molecular Psychiatry 21 (1), 133-148 (2016).

M. Huska and M. Vingron, "Improved Prediction of Non-methylated Islands in Vertebrates Highlights Different Characteristic Sequence Patterns," PLoS Computational Biology 12 (12), e1005249 (2016).

J. M. Muino, S. de Bruijn, A. Pajoro, K. Geuten, M. Vingron, G. C. Angenent, and K. Kaufmann, "Evolution of DNA-Binding Sites of a Floral Master Regulatory Transcription Factor," Molecular Biology and Evolution 33 (1), 185-200 (2016).

S. Schöne, M. Jurk, M. B. Helabad, I. Dror, I. Lebars, B. Kieffer, P. Imhof, R. Rohs, M. Vingron, M. Thomas-Chollier, and S. Meijsing, "Corrigendum: Sequences flanking the core-binding site modulate glucocorticoid receptor structure and activity," Nature Communications 7, 13784 (2016).

S. Schöne, M. Jurk, M. B. Helabad, I. Dror, I. Lebars, B. Kieffer, P. Imhof, R. Rohs, M. Vingron, M. Thomas-Chollier, and S. Meijsing, "Sequences flanking the core-binding site modulate glucocorticoid receptor structure and activity," Nature Communications 7, 12621 (2016).

M. Ganbari, Julia Lasserre, and M. Vingron, "Reconstruction of gene networks using prior knowledge," BMC Systems Biology 9, 9:84 (2015).

F. Eduati, L. M. Mangravite, T. Wang, H. Tang, J. C. Bare, R. Huang, T. Norman, M. Kellen, M. P. Menden, J. Yang, X. Zhan, R. Zhong, G. Xiao, M. Xia, N. Abdo, O. Kosyk, Niehs-Ncats-Unc Dream Toxicogenetics Collaboration, A. van Bömmel, B. Caffrey, M. Heinig, M. Huska, A. Mammana, J. Perner, M. Vingron, S. Friend, A. Dearry, A. Simeonov, R. R. Tice, I. Rusyn, F. A. Wright, G. Stolovitzky, Y. Xie, and J. Saez-Rodriguez, "Prediction of human population responses to toxic compounds by a collaborative competition," Nat Biotechnol 33 (9), 933-940 (2015).

J. George, J. S. Lim, S. J. Jang, Y. Cun, L. Ozretic, G. Kong, F. Leenders, X. Lu, L. Fernandez-Cuesta, G. Bosco, C. Müller, I. Dahmen, N. S. Jahchan, K. S. Park, D. Yang, A. N. Karnezis, D. Vaka, A. Torres, M. S. Wang, J. O. Korbel, R. Menon, S. M. Chun, D. Kim, M. Wilkerson, N. Hayes, D. Engelmann, B. Putzer, M. Bos, S. Michels, I. Vlasic, D. Seidel, B. Pinther, P. Schaub, C. Becker, J. Altmuller, J. Yokota, T. Kohno, R. Iwakawa, K. Tsuta, M. Noguchi, T. Muley, H. Hoffmann, P. A. Schnabel, I. Petersen, Y. Chen, A. Soltermann, V. Tischler, C. M. Choi, Y. H. Kim, P. P. Massion, Y. Zou, D. Jovanovic, M. Kontic, G. M. Wright, P. A. Russell, B. Solomon, I. Koch, M. Lindner, L. A. Muscarella, A. la Torre, J. K. Field, M. Jakopovic, J. Knezevic, E. Castanos-Velez, L. Roz, U. Pastorino, O. T. Brustugun, M. Lund-Iversen, E. Thunnissen, J. Köhler, M. Schuler, J. Botling, M. Sandelin, M. Sanchez-Cespedes, H. B. Salvesen, V. Achter, U. Lang, M. Bogus, P. M. Schneider, T. Zander, S. Ansen, M. Hallek, J. Wolf, M. Vingron, Y. Yatabe, W. D. Travis, P. Nurnberg, C. Reinhardt, S. Perner, L. Heukamp, R. Büttner, S. A. Haas, E. Brambilla, M. Peifer, J. Sage, and R. K. Thomas, "Comprehensive genomic profiles of small cell lung cancer," Nature 524 (7563), 47-53 (2015).

Denise Emmerich, Tomasz Zemojtel, Jochen Hecht, Peter Krawitz, Malte Spielmann, Jirko Kühnisch, Karolina Kobus, Monika Oßwald, Verena Heinrich, Peter Berlien, Ute Müller, Victor-F. Mautner, Katharina Wimmer, Peter N. Robinson, Martin Vingron, Sigrid Tinschert, Stefan Mundlos, and Mateusz Kolanczyk, "Somatic neurofibromatosis type 1 (NF1) inactivation events in cutaneous neurofibromas of a single NF1 patient," European journal of human genetics 23 (6), 1870-1873 (2015).