Publikationen von Martin Vingron

David Heller and Martin Vingron, "SVIM: Structural Variant Identification using Mapped Long Reads," Bioinformatics 35 (17), 2907-2915 (2019).

W. Kopp and Martin Vingron, "DNA Motif Match Statistics Without Poisson Approximation," Journal of Computational Biology 26 (8), 846-865 (2019).

Alexandra Despang, Robert Schöpflin, Martin Franke, Salaheddine Ali, Ivana Jerković, Christina Paliou, Wing-Lee Chan, Bernd Timmermann, Lars Wittler, Martin Vingron, Stefan Mundlos, and Daniel M. Ibrahim, "Functional dissection of the Sox9-Kcnj2 locus identifies nonessential and instructive roles of TAD architecture," Nature Genetics 51 (8), 1263-1271 (2019).

S. van Heesch, F. Witte, V. Schneider-Lunitz, J. F. Schulz, E. Adami, A. B. Faber, M. Kirchner, H. Maatz, S. Blachut, C. L. Sandmann, M. Kanda, C. L. Worth, S. Schafer, L. Calviello, R. Merriott, G. Patone, O. Hummel, E. Wyler, B. Obermayer, M. B. Mucke, E. L. Lindberg, F. Trnka, S. Memczak, M. Schilling, L. E. Felkin, P. J. R. Barton, N. M. Quaife, K. Vanezis, S. Diecke, M. Mukai, N. Mah, S. J. Oh, A. Kurtz, C. Schramm, D. Schwinge, M. Sebode, M. Harakalova, F. W. Asselbergs, A. Vink, R. A. de Weger, S. Viswanathan, A. A. Widjaja, A. Gartner-Rommel, H. Milting, C. Dos Remedios, C. Knosalla, P. Mertins, M. Landthaler, Martin Vingron, W. A. Linke, J. G. Seidman, C. E. Seidman, N. Rajewsky, U. Ohler, S. A. Cook, and N. Hubner, "The Translational Landscape of the Human Heart," Cell 178 (1), 242-260 (2019).

Christina Paliou, Philine Guckelberger, Robert Schöpflin, Verena Heinrich, Andrea Esposito, Andrea M. Chiariello, Simona Bianco, Carlo Annunziatella, Johannes Helmuth, Stefan Haas, Ivana Jerković, Norbert Brieske, Lars Wittler, Bernd Timmermann, Mario Nicodemi, Martin Vingron, Stefan Mundlos, and Guillaume Andrey, "Preformed Chromatin Topology Assists Transcriptional Robustness of Shh during Limb Development," Proceedings of the National Academy of Sciences of the United States of America 116 (25), 12390-12399 (2019).

J. P. Mallm, M. Iskar, N. Ishaque, L. C. Klett, S. J. Kugler, Jose M. Muino, V. B. Teif, A. M. Poos, S. Grossmann, F. Erdel, D. Tavernari, S. D. Koser, S. Schumacher, B. Brors, R. Konig, D. Remondini, Martin Vingron, S. Stilgenbauer, P. Lichter, M. Zapatka, D. Mertens, and K. Rippe, "Linking aberrant chromatin features in chronic lymphocytic leukemia to transcription factor networks," Molecular Systems Biology 15 (5), e8339 (2019).

Tobias Zehnder, Philipp Benner, and Martin Vingron, "Predicting enhancers in mammalian genomes using supervised hidden Markov models," BMC Bioinformatics 20 (1), 157 (2019).

Mahsa Ghanbari, Julia Lasserre, and Martin Vingron, "The Distance Precision Matrix: computing networks from non-linear relationships," Bioinformatics 35 (6), 1009-1017 (2019).

Katerina Kraft, Andreas Magg, Verena Heinrich, Christina Riemenschneider, Robert Schöpflin, Julia Markowski, Daniel Ibrahim, Rocío Acuna-Hidalgo, Alexandra Despang, Guillaume Andrey, Lars Wittler, Bernd Timmermann, Martin Vingron, and Stefan Mundlos, "Serial genomic inversions induce tissue-specific architectural stripes, gene misexpression and congenital malformations," Nature Cell Biology 21 (3), 305-310 (2019).

Kenjiro Adachi, Wolfgang Kopp, Guangming Wu, Sandra Heising, Boris Greber, Martin Stehling, Marcos J. Araúzo-Bravo, Stefan T. Boerno, Bernd Timmermann, Martin Vingron, and Hans R. Schöler, "Esrrb Unlocks Silenced Enhancers for Reprogramming to Naive Pluripotency - Correction," Cell Stem Cell 23 (6), 900-904 (2018).

Xinyi Yang and Martin Vingron, "Classifying human promoters by occupancy patterns identifies recurring sequence elements, combinatorial binding, and spatial interactions," BMC Biology 16 (1), 138 (2018).

Stefanie Schöne, Anna Melissa Bothe, Edda Einfeldt, Marina Borschiwer, Philipp Florian Benner, Martin Vingron, Morgane Thomas-Chollier, and Sebastiaan H. Meijsing, "Synthetic STARR-seq reveals how DNA shape and sequence modulate transcriptional output and noise," PLoS Genetics 14 (11), e1007793 (2018).

Bjørt K. Kragesteen , Malte Spielmann, Christina Paliou, Verena Heinrich, Robert Schöpflin, Andrea Esposito, Carlo Annunziatella, Simona Bianco , Andrea M. Chiariello, Ivana Jerković , Izabela Harabula, Philine Guckelberger, Michael Pechstein, Lars Wittler, Wing-Lee Chan, Martin Franke, Darío G. Lupiáñez , Katerina Kraft, Bernd Timmermann, Martin Vingron, Axel Visel, Mario Nicodemi, Stefan Mundlos, and Guillaume Andrey, "Dynamic 3D chromatin architecture determines enhancer specificity and morphogenetic identity in limb development," Nature Genetics 50 (10), 1463-1473 (2018).

L. Grassi, F. Pourfarzad, S. Ullrich, A. Merkel, F. Were, E. Carrillo-de-Santa-Pau, G. Yi, I. H. Hiemstra, A. T. J. Tool, E. Mul, J. Perner, E. Janssen-Megens, K. Berentsen, H. Kerstens, E. Habibi, M. Gut, M. L. Yaspo, M. Linser, E. Lowy, A. Datta, L. Clarke, P. Flicek, M. Vingron, D. Roos, T. K. van den Berg, S. Heath, D. Rico, M. Frontini, M. Kostadima, I. Gut, A. Valencia, W. H. Ouwehand, H. G. Stunnenberg, J. H. A. Martens, and T. W. Kuijpers, "Dynamics of Transcription Regulation in Human Bone Marrow Myeloid Differentiation to Mature Blood Neutrophils," Cell Reports 24 (10), 2784-2794 (2018).

Alena van Bömmel, Michael I. Love, Ho-Ryun Chung, and Martin Vingron, "coTRaCTE predicts co-occurring transcription factors within cell-type specific enhancers," PLoS Computational Biology 14 (8), e1006372 (2018).

Kenjiro Adachi, Wolfgang Kopp, Guangming Wu, Sandra Heising, Boris Greber, Martin Stehling , Marcos J. Araúzo-Bravo, Stefan T. Boerno, Bernd Timmermann, Martin Vingron, and Hans R. Schöler, "Esrrb Unlocks Silenced Enhancers for Reprogramming to Naive Pluripotency," Cell Stem Cell 23 (2), 266-275 (2018).

Sabrina Grasse, Matthias Lienhard, Steffen Frese, Martin Kerick, Anne Steinbach, Christina Grimm, Michelle Hussong, Jana Rolff, Michael Becker, Felix Dreher, Uwe Schirmer, Stefan T. Boerno, Anna Ramisch, Gunda Leschber, Bernd Timmermann, Christian Grohé, Heike Lüders, Martin Vingron, Iduna Fichtner, Sebastian Klein, Margarete Odenthal, Reinhard Büttner, Hans Lehrach, Holger Sültmann, Ralf Herwig, and Ruth M. Schweiger, "Epigenomic profiling of non-small cell lung cancer xenografts uncover LRP12 DNA methylation as predictive biomarker for carboplatin resistance," Genome Medicine 10 (1), 10:55 (2018).

Simona Bianco, Darío G. Lupiáñez, Andrea M. Chiariello, Carlo Annunziatella, Katerina Kraft, Robert Schöpflin, Lars Wittler, Guillaume Andrey, Martin Vingron, Ana Pombo, Stefan Mundlos, and Mario Nicodemi, "Polymer physics predicts the effects of structural variants on chromatin architecture," Nature Genetics 50 (5), 662-667 (2018).

Verena Thormann, Maika C. Rothkegel, Robert Schöpflin, Laura V. Glaser, Peter Djuric, Na Li, Ho-Ryun Chung, Kevin Schwahn, Martin Vingron, and Sebastiaan Meijsing, "Genomic dissection of enhancers uncovers principles of combinatorial regulation and dynamic wiring of enhancer-promoter contacts," Nucleic Acids Research (London) 46 (6), 2868-2882 (2018).

J. George, V. Walter, M. Peifer, L. B. Alexandrov, D. Seidel, F. Leenders, L. Maas, C. Müller, I. Dahmen, T. M. Delhomme, M. Ardin, N. Leblay, G. Byrnes, R. Sun, A. De Reynies, A. McLeer-Florin, G. Bosco, F. Malchers, R. Menon, J. Altmüller, C. Becker, P. Nürnberg, V. Achter, U. Lang, P. M. Schneider, M. Bogus, M. G. Soloway, M. D. Wilkerson, Y. Cun, J. D. McKay, D. Moro-Sibilot, C. G. Brambilla, S. Lantuejoul, N. Lemaitre, A. Soltermann, W. Weder, V. Tischler, O. T. Brustugun, M. Lund-Iversen, A. Helland, S. Solberg, S. Ansen, G. Wright, B. Solomon, L. Roz, U. Pastorino, I. Petersen, J. H. Clement, J. Sanger, J. Wolf, Martin Vingron, T. Zander, S. Perner, W. D. Travis, S. A. Haas, M. Olivier, M. Foll, R. Buttner, D. N. Hayes, E. Brambilla, L. Fernandez-Cuesta, and R. K. Thomas, "Integrative genomic profiling of large-cell neuroendocrine carcinomas reveals distinct subtypes of high-grade neuroendocrine lung tumors," Nature Communications 9 (1), 1048 (2018).