Publikationen von Martin Vingron

Damir Baranasic, Matthias Hörtenhuber, Piotr Balwierz, Tobias Zehnder, Abdul Kadir Mukarram, Chirag Nepal, Csilla Varnai, Yavor Hadzhiev, Ada Jimenez- Gonzalez, Nan Li, Joseph Wragg, Fabio D’Orazio, Noelia Díaz, Benjamín Hernández- Rodríguez, Zelin Chen, Marcus Stoiber, Michaël Dong, Irene Stevens, Samuel E. Ross, Anne Eagle, Ryan Martin, Pelumi Obasaju, Sepand Rastegar, Alison C. McGarvey, Wolfgang Kopp, Emily Chambers, Dennis Wang, Hyejeong R. Kim, Rafael D. Acemel, Silvia Naranjo, Maciej Lapinski, Vanessa Chong, Sinnakaruppan Mathavan, Bernard Peers, Tatjana Sauka-Spengler, Martin Vingron, Piero Carninci, Uwe Ohler, Scott Allen Lacadie, Shawn Burgess, Cecilia Winata, Freek van Eeden, Juan M. Vaquerizas, José Luis Gómez-Skarmeta, Daria Onichtchouk, Ben James Brown, Ozren Bogdanovic, Monte Westerfield, Fiona C. Wardle, Carsten O. Daub, Boris Lenhard, and Ferenc Müller, "Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements," Nature Genetics 54 (7), 1037-1050 (2022).

Daniel Rosebrock, Sneha Arora, Naresh Mutukula, Rotem Volkman, Elzbieta Gralinska, Anastasios Balaskas, Amèlia Aragonés Hernández, Rene Buschow, Björn Brändl, Franz-Josef Müller, Peter F. Arndt, Martin Vingron, and Yechiel Elkabetz, "Enhanced cortical neural stem cell identity through short SMAD and WNT inhibition in human cerebral organoids facilitates emergence of outer radial glial cells," Nature Cell Biology 24, 981-995 (2022).

Elzbieta Gralinska, Clemens Kohl, Sokhandan Fadakar, and Martin Vingron, "Visualizing Cluster-specific Genes from Single-cell Transcriptomics Data Using Association Plots," Journal of Molecular Biology 434 (11), 167525 (2022).

J. Hertzberg, S. Mundlos, M. Vingron, and G. Gallone, "TADA – a Machine Learning Tool for Functional Annotation based Prioritisation of Putative Pathogenic CNVs," Genome Biology 23 (1), 67 (2022).

Lam-Ha Ly and Martin Vingron, "Effect of imputation on gene network reconstruction from single-cell RNA-seq data," Patterns 3 (2), 100414 (2021).

Laura Viola Glaser, Mara Steiger, Alisa Fuchs, Alena van Bömmel, Edda Einfeldt, Ho-Ryun Chung, Martin Vingron, and Sebastiaan H. Meijsing, "Assessing genome-wide dynamic changes in enhancer activity during early mESC differentiation by FAIRE-STARR-seq," Nucleic Acids Research (London) 49 (21), 12178-12195 (2021).

Elin Enervald, Lynn Marie Powell, Lora Boteva, Rossana Foti, Nerea Blanes Ruiz, Gözde Kibar, Agnieszka Piszczek, Fatima Cavaleri, Martin Vingron, Andrea Cerase, and Sara B. C. Buonomo, "RIF1 and KAP1 differentially regulate the choice of inactive versus active X chromosomes," The EMBO Journal 40 (24), e105862 (2021).

Philipp Benner and Martin Vingron, "Quantifying the tissue-specific regulatory information within enhancer DNA sequences," NAR: genomics and bioinformatics 3 (4), lqab095 (2021).

Magdalena Socha, Anna Sowińska-Seidler, Uirá Souto Melo, Bjørt K. Kragesteen, Martin Franke, Verena Heinrich, Robert Schöpflin, Inga Nagel, Nicolas Gruchy, Stefan Mundlos, Varun K. A. Sreenivasan, Cristina López, Martin Vingron, Ewelina Bukowska-Olech, Malte Spielmann, and Aleksander Jamsheer, "Position effects at the FGF8 locus are associated with femoral hypoplasia," The American Journal of Human Genetics 108 (9), 1725-1734 (2021).

Lenka Belicova , Urska Repnik , Julien Delpierre , Elzbieta Gralinska, Sarah Seifert , José Ignacio Valenzuela , Hernán Andrés Morales-Navarrete , Christian Franke , Helin Räägel , Evgeniya Shcherbinina , Tatiana Prikazchikova , Victor Koteliansky , Martin Vingron, Yannis L. Kalaidzidis , Timofei Zatsepin , and Marino Zerial , "Anisotropic expansion of hepatocyte lumina enforced by apical bulkheads," The Journal of Cell Biology: JCB 220 (10), e202103003 (2021).

Franziska Witte, Jorge Ruiz-Orera, Camilla Ciolli Mattioli, Susanne Blachut, Eleonora Adami, Jana Felicitas Schulz, Valentin Schneider-Lunitz, Oliver Hummel, Giannino Patone, Michael Benedikt Mücke, Jan Šilhavý, Matthias Heinig, Leonardo Bottolo, Daniel Sanchis, Martin Vingron, Marina Chekulaeva, Michal Pravenec, Norbert Hubner, and Sebastiaan van Heesch, "A trans locus causes a ribosomopathy in hypertrophic hearts that affects mRNA translation in a protein length-dependent fashion," Genome Biology 22 (1), 191 (2021).

Martyna Gajos, Olga Jasnovidova, Alena van Bömmel, Susanne Freier, Martin Vingron, and Andreas Mayer, "Conserved DNA sequence features underlie pervasive RNA polymerase pausing," Nucleic Acids Research (London) 49 (8), 4402-4420 (2021).

David Heller and Martin Vingron, "SVIM-asm: structural variant detection from haploid and diploid genome assemblies," Bioinformatics 36 (22-23), 5519-5521 (2020).

Francisca M. Real, Stefan A. Haas, Paolo Franchini, Peiwen Xiong, Oleg Simakov, Heiner Kuhl, Robert Schöpflin, David Heller, Mohammad Hossein Moeinzadeh, Verena Heinrich, Thomas Krannich , Annkatrin Bressin, Michaela F. Hartmann, Stefan A. Wudy, Dina K. N. Dechmann, Alicia Hurtado, Francisco J. Barrionuevo, Magdalena Schindler, Izabela Harabula, Marco Osterwalder, Michael Hiller, Lars Wittler, Axel Visel, Bernd Timmermann, Axel Meyer, Martin Vingron, Rafael Jiménez, Stefan Mundlos, and Dario G. Lupiáñez, "The mole genome reveals regulatory rearrangements associated with adaptive intersexuality," Science 370 (6513), 208-214 (2020).

Uirá Souto Melo, Robert Schöpflin, Rocio Acuna-Hidalgo, Martin Atta Mensah, Björn Fischer-Zirnsak, Manuel Holtgrewe, Marius-Konstantin Klever, Seval Türkmen, Verena Heinrich, Ilina Datkhaeva Pluym, Eunice Matoso, Sérgio Bernardo de Sousa, Pedro Louro, Wiebke Hülsemann, Monika Cohen, Andreas Dufke, Anna Latos-Bieleńska, Martin Vingron, Vera Kalscheuer, Fabiola Quintero-Rivera, Malte Spielmann, and Stefan Mundlos, "Hi-C Identifies Complex Genomic Rearrangements and TAD-Shuffling in Developmental Diseases," The American Journal of Human Genetics 106 (6), 872-884 (2020).

M-Hossein Moeinzadeh, Yang, Jun, Evgeny Muzychenko, Giuseppe Gallone, David Heller, Knut Reinert, Stefan Haas, and Martin Vingron, "Ranbow: A fast and accurate method for polyploid haplotype reconstruction," PLOS Computational Biology 16 (5), e1007843 (2020).

Philipp Benner and Martin Vingron, "ModHMM: A Modular Supra-Bayesian Genome Segmentation Method," Journal of Computational Biology 27 (4), 442-457 (2020).

Christina E. Herkt, Brian Caffrey, Kristin Surmann, Sascha Blankenburg, Manuela Gesell Salazar, Anna L. Jung, Stefanie M. Herbel, Kerstin Hoffmann, Leon N. Schulte, Wei Chen, Alexandra Sittka-Stark, Uwe Völker, Martin Vingron, Annalisa Marsico, Wilhelm Bertrams, and Bernd Schmeck, "A MicroRNA Network Controls Legionella pneumophila Replication in Human Macrophages via LGALS8 and MX1," mBio 11 (2), e03155-19 (2020).

Sascha Young Kupke, Lam-Ha Ly, Stefan T. Börno, Alexander Ruff, Bernd Timmermann, Martin Vingron, and Stefan Haas, "Single-Cell Analysis Uncovers a Vast Diversity in Intracellular Viral Defective Interfering RNA Content Affecting the Large Cell-to-Cell Heterogeneity in Influenza A Virus Replication," Viruses 12 (1), 71 (2020).

Anna Ramisch, Verena Heinrich, Laura V. Glaser, Alisa Fuchs, Xinyi Yang, Philipp Benner, Robert Schöpflin, Na Li, Sarah Kinkley, Anja Römer-Hillmann, John Longinotto, Steffen Heyne, Beate Czepukojc, Sonja M. Kessler, Alexandra K. Kiemer, Cristina Cadenas, Laura Arrigoni, Nina Gasparoni, Thomas Manke, Thomas Pap, Andrew Pospisilik, Jan Hengstler, Jörn Walter, Sebastiaan Meijsing, Ho-Ryun Chung, and Martin Vingron, "CRUP: a comprehensive framework to predict condition-specific regulatory units," Genome Biology: Biology for the Post-Genomic Era 20 (1), 227 (2019).