Publikationen von Bernd Timmermann

Jonathan Woodsmith, Luise Apelt, Victoria Casado-Medrano, Ziya Özkan, Bernd Timmermann, and Ulrich Stelzl, "Protein interaction perturbation profiling at amino-acid resolution," Nature methods 14 (12), 1213-1221 (2017).

Hans Binder, Lydia Hopp, Michal R. Schweiger, Steve Hoffmann, Frank Jühling, Martin Kerick, Bernd Timmermann, Susann Siebert, Christina Grimm, Lilit Nersisyan, Arsen Arakelyan, Maria Herberg, Peter Buske, Henry Loeffler-Wirth, Maciej Rosolowski, Christoph Engel, Jens Przybilla, Martin Peifer, Nicolaus Friedrichs, Gabriela Moeslein, Margarete Odenthal, Michelle Hussong, Sophia Peters, Stefanie Holzapfel, Jacob Nattermann, Robert Hueneburg, Wolff Schmiegel, Brigitte Royer-Pokora, Stefan Aretz, Michael Kloth, Matthias Kloor, Reinhard Buettner, Jörg Galle, and Markus Loeffler, "Genomic and transcriptomic heterogeneity of colorectal tumors arising in Lynch Syndrome," The Journal of Pathology: an Official Journal of the Pathological Society of Great Britain and Ireland 243 (2), 242-254 (2017).

Olga Herdt, Alexander Neumann, Bernd Timmermann, and Florian Heyd, "The cancer-associated U2AF35 470A>G (Q157R) mutation creates an in-frame alternative 5’ splice site that impacts on splicing regulation in Q157R patients," RNA 2017, pii: rna.061432.117 (2017).

Frederic Koch, Manuela Scholze, Lars Wittler, Dennis Schifferl, Smita Sudheer, Phillip Grote, Bernd Timmermann, Karol Macura, and Bernhard G. Herrmann, "Antagonistic Activities of Sox2 and Brachyury Control the Fate Choice of Neuro-Mesodermal Progenitors," Developmental Cell 42, 514-526 (2017).

So-Young Lim, Iris Macheleidt, Priya Dalvi, Stephan C. Schäfer, Martin Kerick, Luka Ozretić, Sandra Ortiz-Cuaran, Julie George, Sabine Merkelbach-Bruse, Jürgen Wolf, Bernd Timmermann, Roman K. Thomas, Michal R. Schweiger, Reinhard Buettner, and Margarete Odenthal, "LSD1 modulates the non-canonical integrin β3 signaling pathway in non-small cell lung carcinoma cells," Scientific Reports 7, 7:10292 (2017).

Jun Yang, Mohammad Hossein Moeinzadeh, Heiner Kuhl, Johannes Helmuth, Peng Xiao, Stefan Haas, Guiling Liu, Jianli Zheng, Zhe Sun, Weijuan Fan, Gaifang Deng, Hongxia Wang, Fenhong Hu, Shanshan Zhao, Alisdair R. Fernie, Stefan T. Börno, Bernd Timmermann, Peng Zhang, and Martin Vingron, "Haplotype-resolved sweet potato genome traces back its hexaploidization history," Nature Plants 2017 (3), 696-703 (2017).

Xiangqun Zheng-Bradley, Ian Streeter, Susan Fairley, David Richardson, Laura Clarke, Paul Flicek, Consortium 1000 Genomes Project , and Bernd Timmermann, "Alignment of 1000 Genomes Project Reads to Reference Assembly GRCh38," GigaScience 6 (7), 1-8 (2017).

Lisette Lange, Matthias Marks, Jinhua Liu, Lars Wittler, Hermann Bauer, Sandra Piehl, Gabriele Bläß, Bernd Timmermann, and Bernhard G. Herrmann, "Pattering and gastrulation deffects caused by the tw18 lethal are due to loss of Ppp2r1a," Biology Open 6 (6), 752-764 (2017).

Shuqing Xu, Thomas Brockmoeller, Aura Navarro-Quezada, Heiner Kuhl, Klaus Gase, Zhihao Ling, Wenwu Zhou, Christoph Kreitzer, Mario Stanke, Haibao Tang, Eric Lyons, Priyanka Pandey, Shree Prakash Pandey, Bernd Timmermann, Emmanuel Gaquerel, and Ian Thomas Baldwin, "Wild tobacco genomes reveal the evolution of nicotine biosynthesis," Proceedings of the National Academy of Sciences of the United States of America 114 (23), 6133-6138 (2017).

M. Twardziok, D. Meierhofer, S. T. Börno, B. Timmermann, S. Jäger, S. Boral, A. Eggert, C. I. Delebinski, and G. Seifeert, "Transcriptomic and proteomic insight into the effects of a defined European mistletoe extract in Ewing sarcoma cells reveals cellular stress responses," BMC Complementary and Alternative Medicine 2017, 17:237 (2017).

Matthias Lienhard, Sabrina Grasse, Jana Rolff, Steffen Frese, Uwe Schirmer, Michael Becker, Stefan T. Börno, Bernd Timmermann, Lukas Chavez, Holger Sültmann, Gunda Leschber, Iduna Fichtner, Michal R. Schweiger, and Ralf Herwig, "QSEA – modelling of genome-wide DNA methylation from sequencing enrichment experiments," Nucleic Acids Research (London) 45 (6), e44 (2017).

Guillaume Andrey, Robert Schöpflin, Ivana Jerković, Verena Heinrich, Daniel Ibrahim, Christina Paliou, Myriam Hochradel, Bernd Timmermann, Stefan Haas, Martin Vingron, and Stefan Mundlos, "Characterization of hundreds of regulatory landscapes in developing limbs reveals two regimes of chromatin folding," Genome Research 27 (2), 223-233 (2017).

Michelle Hussong, Christian Kaehler, Martin Kerick, Christina Grimm, Alexander Franz, Bernd Timmermann, Franziska Welzel, Jörg Isensee, Tim Hucho, Sylvia Krobitsch, and Michal R. Schweiger, "The bromodomain protein BRD4 regulates splicing during heat shock," Nucleic Acids Research (London) 45 (1), 382-394 (2017).

Martin Franke, Daniel Ibrahim, Guillaume Andrey, Wibke Schwarzer, Verena Heinrich, Robert Schöpflin, Katerina Kraft, Rieke Kempfer, Ivana Jerković, Wing-Lee Chan, Malte Spielmann, Bernd Timmermann, Lars Wittler, Ingo Kurth, Paola Cambiaso, Orsetta Zuffardi, Gunnar Houge, Lindsay Lambie, Francesco Brancati, Ana Pombo, Martin Vingron, Francois Spitz, and Stefan Mundlos, "Formation of novel chromatin domains determines pathogenicity of genomic duplications," Nature 538 (7624), 265-269 (2016).

G. D. Poznik, Y. Xue, F. L. Mendez, T. F. Willems, A. Massaia, M. A. Wilson Sayres, Consortium The 1000 Genomes Projekt, H. Lehrach, R. Sudbrak, M. W. Albrecht, V. Amstislavskiy, T. A. Borodina, M. Lienhard, F. Mertes, M. Sultan, B. Timmermann, and M.-L. Yaspo, "Punctuated bursts in human male demography inferred from 1,244 worldwide Y-chromosome sequences," Nature Genetics 48 (6), 593-599 (2016).

F. Broecker, C. Hardt, R. Herwig, B. Timmermann, M. Kerick, A. Wunderlich, M. R. Schweiger, L. Borsig, M. Heikenwalder, H. Lehrach, and K. Moelling, "Transcriptional signature induced by a metastasis-promoting c-Src mutant in a human breast cell line," The FEBS Journal 283 (9), 1669-1688 (2016).

Jakob C. Mueller, Heiner Kuhl, Bernd Timmermann, and Bart Kempenaers, "Characterization of the genome and transcriptome of the blue tit Cyanistes caeruleus: polymorphisms, sex-biased expression and selection signals," Molecular Ecology Resources 16 (2), 549-561 (2016).

Mohammad Tauqeer Alam, Aleksej Zelezniak, Michael Mülleder, Pavel Shliaha, Roland Schwarz, Floriana Capuano, Jakob Vowinckel, Elahe Radmanesfahar , Antje Krüger, Enrica Calvani , Steve Michel, Stefan T. Börno, Stefan Christen, Kiran Raosaheb Patil , Bernd Timmermann, Kathryn S. Lilley, and Markus Ralser, "The metabolic background is a global player in Saccharomyces gene expression epistasis," Nature Microbiology 2016, 15030 (2016).

Isabel Spier, Martin Kerick, Dmitriy Drichel, Sukanya Horpaopan, Janine Altmüller, Andreas Laner, Stefanie Holzapfel, Sophia Peters, Ronja Adam, Bixiao Zhao, Tim Becker, Richard P. Lifton, Elke Holinski-Feder, Sven Perner, Holger Thiele, Markus M. Nöthen, Per Hoffmann, Bernd Timmermann, Michal R. Schweiger, and Stefan Aretz, "Exome sequencing identifies potential novel candidate genes in patients with unexplained colorectal adenomatous polyposis," Famillial Cancer 2016, 1-8 (2016).

Isabel Spier, Dmitriy Drichel, Martin Kerick, Jutta Kirfel, Sukanya Horpaopan, Andreas Laner, Stefanie Holzapfel, Sophia Peters, Ronja Adam, Bixiao Zhao, Tim Becker, Richard P. Lifton, Sven Perner, Per Hoffmann, Glen Kristiansen, Bernd Timmermann, Markus M. Nöthen, Elke Holinski-Feder, Michal R. Schweiger, and Stefan Aretz, "Low-level APC mutational mosaicism is the underlying cause in a substantial fraction of unexplained colorectal adenomatous polyposis cases," Journal of Medical Genetics , 103468 (2015).