Publikationen von H. G. Roider

M. Thomas-Chollier, A. Hufton, M. Heinig, S. O'Keeffe, N. E. Masri, H. G. Roider, T. Manke, and M. Vingron, "Transcription factor binding predictions using TRAP for the analysis of ChIP-seq data and regulatory SNPs," Nat Protoc 6 (12), 1860-9 (2011).

M. Heinig, E. Petretto, C. Wallace, L. Bottolo, M. Rotival, H. Lu, Y. Li, R. Sarwar, S. R. Langley, A. Bauerfeind, O. Hummel, Y. A. Lee, S. Paskas, C. Rintisch, K. Saar, J. Cooper, R. Buchan, E. E. Gray, J. G. Cyster, J. Erdmann, C. Hengstenberg, S. Maouche, W. H. Ouwehand, C. M. Rice, N. J. Samani, H. Schunkert, A. H. Goodall, H. Schulz, H. G. Roider, M. Vingron, S. Blankenberg, T. Munzel, T. Zeller, S. Szymczak, A. Ziegler, L. Tiret, D. J. Smyth, M. Pravenec, T. J. Aitman, F. Cambien, D. Clayton, J. A. Todd, N. Hubner, and S. A. Cook, "A trans-acting locus regulates an anti-viral expression network and type 1 diabetes risk," Nature 467 (7314), 460-464 (2010).

S. M. Kielbasa, H. Klein, H. G. Roider, M. Vingron, and N. Blüthgen, "TransFind--predicting transcriptional regulators for gene sets," Nucleic Acids Research 38 Suppl, W275-W280 (2010).

Helge G. Roider, Boris Lenhard, Aditi Kanhere, Stefan A. Haas, and Martin Vingron, "CpG-depleted promoters harbor tissue-specific transcription factor binding signals—implications for motif overrepresentation analyses.," Nucleic Acids Research 37 (19), 6305-6315 (2009).

Helge G. Roider, Thomas Manke, Sean O'Keeffe, Martin Vingron, and Stefan A. Haas, "PASTAA: identifying transcription factors associated with sets of co-regulated genes.," Bioinformatics 25 (4), 435-442 (2009).

Thomas Manke, Helge G. Roider, and Martin Vingron, "Statistical Modeling of Transcription Factor Binding Affinities Predicts Regulatory Interactions," PLoS Computational Biology 4 (3), e1000039-e1000039 (2008).

Helge G. Roider, Aditi Kanhere, Thomas Manke, and Martin Vingron, "Predicting transcription factor affinities to DNA from a biophysical model," Bioinformatics 23 (2), 134-141 (2007).

Thomas Manke, Helge G. Roider, and Martin Vingron, "A biophysical approach to large-scale protein-DNA binding data", in Modern Genome Annotation: The Biosapiens Network, edited by D. Frishman and Alfonso Valencia (Springer, New York, 2008), pp. 91-102.