Publikationen von T. Manke

H. Bu, M. R. Schweiger, T. Manke, A. Wunderlich, B. Timmermann, M. Kerick, L. Pasqualini, E. Shehu, C. Fuchsberger, A. C. Cato, and H. Klocker, "Anterior gradient 2 and 3--two prototype androgen-responsive genes transcriptionally upregulated by androgens and by oestrogens in prostate cancer cells," FEBS Journal 280 (5), 1249-66 (2013).

C. E. Ott, J. Grunhagen, M. Jager, D. Horbelt, S. Schwill, K. Kallenbach, G. Guo, T. Manke, P. Knaus, S. Mundlos, and P. N. Robinson, "MicroRNAs differentially expressed in postnatal aortic development downregulate elastin via 3' UTR and coding-sequence binding sites," PLoS ONE 6 (1), e16250 (2011).

M. Thomas-Chollier, A. Hufton, M. Heinig, S. O'Keeffe, N. E. Masri, H. G. Roider, T. Manke, and M. Vingron, "Transcription factor binding predictions using TRAP for the analysis of ChIP-seq data and regulatory SNPs," Nat Protoc 6 (12), 1860-9 (2011).

H. J. Warnatz, D. Schmidt, T. Manke, I. Piccini, M. Sultan, T. Borodina, D. Balzereit, W. Wruck, A. Soldatov, M. Vingron, H. Lehrach, and M. L. Yaspo, "The BTB and CNC homology 1 (BACH1) target genes are involved in the oxidative stress response and in control of the cell cycle," The Journal of Biological Chemistry 286 (26), 23521-32 (2011).

H. J. Warnatz, R. Querfurth, A. Guerasimova, X. Cheng, S. A. Haas, A. L. Hufton, T. Manke, D. Vanhecke, W. Nietfeld, M. Vingron, M. Janitz, H. Lehrach, and M. L. Yaspo, "Functional analysis and identification of cis-regulatory elements of human chromosome 21 gene promoters," Nucleic Acids Research 38 (18), 6112-6123 (2010).

T. Manke, M. Heinig, and M. Vingron, "Quantifying the effect of sequence variation on regulatory interactions," Hum Mutation 31 (4), 477-483 (2010).

A. S. Schaefer, G. M. Richter, M. Nothnagel, T. Manke, H. Dommisch, G. Jacobs, A. Arlt, P. Rosenstiel, B. Noack, B. Groessner-Schreiber, S. Jepsen, B. G. Loos, and S. Schreiber, "A genome-wide association study identifies GLT6D1 as a susceptibility locus for periodontitis," Human Molecular Genetics 19 (3), 553-562 (2010).

X. Cheng, A. Guerasimova, T. Manke, P. Rosenstiel, S. Haas, H. J. Warnatz, R. Querfurth, W. Nietfeld, D. Vanhecke, H. Lehrach, M. L. Yaspo, and M. Janitz, "Screening of human gene promoter activities using transfected-cell arrays," Gene 450 (1-2), 48-54 (2010).

Christian Rödelsperger, Sebastian Köhler, Marcel H. Schulz, Thomas Manke, Sebastian Bauer, and Peter N. Robinson, "Short ultraconserved promoter regions delineate a class of preferentially expressed alternatively spliced transcripts.," Genomics 94 (5), 308-316 (2009).

Claus-Eric Ott, Sebastian Bauer, Thomas Manke, Susan Ahrens, Christian Rödelsperger, Johannes Grünhagen, Uwe Kornak, Georg Duda, Stefan Mundlos, and Peter N. Robinson, "Promiscuous and depolarization-induced immediate-early response genes are induced by mechanical strain of osteoblasts," Journal of Bone and Mineral Research 24 (7), 1247-1262 (2009).

Helge G. Roider, Thomas Manke, Sean O'Keeffe, Martin Vingron, and Stefan A. Haas, "PASTAA: identifying transcription factors associated with sets of co-regulated genes.," Bioinformatics 25 (4), 435-442 (2009).

Christine Stritt, Sina Stern, Kai Harting, Thomas Manke, Daniela Sinske, Heinz Schwarz, Martin Vingron, Alfred Nordheim, and Bernd Knöll, "Paracrine control of oligodendrocyte differentiation by SRF-directed neuronal gene expression.," Nature Neuroscience 12 (4), 418-427 (2009).

Martin Vingron, Alvis Brazma, Richard Coulson, Jacques van Helden, Thomas Manke, Kimmo Palin, Olivier Sand, and Esko Ukkonen, "Integrating sequence, evolution and functional genomics in regulatory genomics.," Genome Biology 10 (1), 202-202 (2009).

Thomas Manke, Helge G. Roider, and Martin Vingron, "Statistical Modeling of Transcription Factor Binding Affinities Predicts Regulatory Interactions," PLoS Computational Biology 4 (3), e1000039-e1000039 (2008).

Lei Mao, Claus Zabel, Marion Herrmann, Tobias Nolden, Florian Mertes, Laetitia Magnol, Caroline Chabert, Daniela Hartl, Yann Herault, Jean Maurice Delabar, Thomas Manke, Heinz Himmelbauer, and Joachim Klose, "Proteomic shifts in embryonic stem cells with gene dose modifications suggest the presence of balancer proteins in protein regulatory networks," PLoS One 2 (11), e1218-e1218 (2007).

Helge G. Roider, Aditi Kanhere, Thomas Manke, and Martin Vingron, "Predicting transcription factor affinities to DNA from a biophysical model," Bioinformatics 23 (2), 134-141 (2007).

Thomas Manke, Lloyd Demetrius, and Martin Vingron, "An entropic characterization of protein interaction networks and cellular robustness," Interface: Journal of the Royal Society 11 (3), 843-850 (2006).

Horst Irlbacher, Jacqueline Franke, Thomas Manke, Martin Vingron, and Ann E. Ehrenhofer-Murray, "Control of replication initiation and heterochromatin formation in Saccharomyces cerevisiae by a regulator of meiotic gene expression," Genes & Development 19 (15), 1811-1822 (2005).

Lloyd Demetrius and Thomas Manke, "Robustness and network evolution--an entropic principle," Physica A: Statistical and Theoretical Physics 364 (3-4), 682-696 (2005).

Thomas Manke, Ricardo Bringas, and Martin Vingron, "Correlating protein-DNA and protein-protein interaction networks," Journal of Molecular Biology 333 (1), 75-85 (2003).