Publikationen von Ralf Herwig

Matthias Lienhard, Christina Grimm, Markus Morkel, Ralf Herwig, and Lukas Chavez, "MEDIPS: genome wide differential coverage analysis of sequencing data derived from DNA enrichment experiments," Bioinformatics 30 (2), 284-286 (2014).

Matthias Lienhard, Christina Grimm, Markus Morkel, Ralf Herwig, and Lukas Chavez, "MEDIPS: genome-wide differential coverage analysis of sequencing data derived from DNA enrichment experiments," Bioinformatics 30 (2), 284-286 (2014).

Imen Rabhi, Sameh Rabhi, Rym Ben-Othman, Mohamed Radhouane Aniba, Sysco Consortium, Ralf Herwig, Bernadette Trentin, David Piquemal, Béatrice Regnault, and Lamia Guizani-Tabbane, "Comparative analysis of resistant and susceptible macrophage gene expression response to Leishmania major parasite," BMC Genomics 14, 14:723 (2013).

Julien Lemaire, Ghada Mkannez, Fatma Z. Guerfali, Cindy Gustin, Hanène Attia, Rabiaa M. Sghaier, Sysco-Consortium, Ralf Herwig, Koussay Dellagi, Dhafer Laouini, and Patricia Renard, "MicroRNA expression profile in human macrophages in response to Leishmania major infection," PLoS Neglected Tropical Diseases 7 (10), e2478 (2013).

Vera Jankowski, Anna Schulz, Axel Kretschmer, Harald Mischak, Falko Boehringer, Markus van der Giet, Doreen Janke, Mirjam Schuchardt, Ralf Herwig, Walter Zidek, and Joachim Jankowski, "The enzymatic activity of the VEGFR2-receptor for the biosynthesis of dinucleoside polyphosphates," Journal of Molecular Medicine 91 (9), 1095-1107 (2013).

Mireia Vilardell, Sergi Civit, and Ralf Herwig, "An integrative computational analysis provides evidence for FBN1-associated network de-regulation in trisomy 21," Biology Open 2 (8), 771-778 (2013).

Christina Grimm, Lukas Chavez, Mireia Vilardell, Alexandra Farrall, Sascha Tierling, Julia W. Böhm, Phillip Grote, Matthias Lienhard, Jörn Dietrich, Bernd Timmermann, Jörn Walter, Michal R. Schweiger, Hans Lehrach, Ralf Herwig, Bernhard G. Herrmann, and Markus Morkel, "DNA–Methylome Analysis of Mouse Intestinal Adenoma Identifies a Tumour-Specific Signature That Is Partly Conserved in Human Colon Cancer," PLoS Genetics 9 (2), e1003250-e1003250 (2013).

B. Suter, J. F. Fontaine, R. Yildirimman, T. Rasko, M. H. Schaefer, A. Rasche, P. Porras, B. M. Vazquez-Alvarez, J. Russ, K. Rau, R. Foulle, M. Zenkner, K. Saar, R. Herwig, M. A. Andrade-Navarro, and E. E. Wanker, "Development and application of a DNA microarray-based yeast two-hybrid system," Nucleic Acids Research (London) 41 (3), 1496-1507 (2013).

T. Y. Doktorova, R. Yildirimman, M. Vinken, M. Vilardell, T. Vanhaecke, H. Gmuender, R. Bort, G. Brolen, G. Holmgren, R. Li, C. Chesne, J. van Delft, J. Kleinjans, J. Castell, P. Bjorquist, R. Herwig, and V. Rogiers, "Transcriptomic responses generated by hepatocarcinogens in a battery of liver-based in vitro models," Carcinogenesis 34 (6), 1393-402 (2013).

M.-L. Fogeron, H. Müller, S. Schade, F. Dreher, V. Lehmann, A. Kühnel, A. K. Scholz, K. Kashofer, A. Zerck, B. Fauler, R. Lurz, R. Herwig, K. Zatloukal, H. Lehrach, J. Gobom, E. Nordhoff, and B. Lange, "LGALS3BP regulates centriole biogenesis and centrosome hypertrophy in cancer cells," Nature Communications 4, 4:1531-4:1531 (2013).

V. Jankowski, A. Schulz, A. Kretschmer, H. Mischak, F. Boehringer, M. van der Giet, D. Janke, M. Schuchardt, R. Herwig, W. Zidek, and J. Jankowski, "The enzymatic activity of the VEGFR2 receptor for the biosynthesis of dinucleoside polyphosphates," Journal of Molecular Medicine-JMM 91 (9), 1095-107 (2013).

Atanas Kamburov, Ulrich Stelzl, Hans Lehrach, and Ralf Herwig, "The ConsensusPathDB interaction database: 2013 update," Nucleic Acids Research (London) 41 (Database issue), D793-800 (2013).

M. Vilardell, S. Civit, and R. Herwig, "An integrative computational analysis provides evidence for FBN1-associated network deregulation in trisomy 21," Biol Open 2 (8), 771-8 (2013).

Yali Xue, Yuan Chen, Qasim Ayub, Ni Huang, Edward V. Ball, Matthew Mort, Andrew D. Phillips, Katy Shaw, Peter D. Stenson, David N. Cooper, Chris Tyler-Smith, The 1000 Genomes Project Consortium, Bernd Timmermann, Hans Lehrach, and Ralf Herwig, "Deleterious- and Disease-Allele Prevalence in Healthy Individuals: Insights from Current Predictions, Mutation Databases, and Population-Scale Resequencing," The American Journal of Human Genetics 91 (6), 1022-1031 (2012).

Joost van Delft, Stan Gaj, Matthias Lienhard, Markus Albrecht, Alexander Kirpiy, Karen Brauers, Sandra Claessen, Daneida Lizarraga, Hans Lehrach, Ralf Herwig, and Jos Kleinjans, "RNA-Seq provides new insights in the transcriptome responses induced by the carcinogen benzo[a]pyrene," Toxicological Sciences 130 (2), 427-439 (2012).

Goncalo R. Abecasis, Adam Auton, Lisa D. Brooks, Mark A. DePristo, Richard M. Durbin, Robert E. Handsaker, Hyun Min Kang, Gabor T. Marth, Gil A. McVean, The 1000 Genomes Project Consortium, Ralf Sudbrak, Marcus Albrecht, Vyacheslav Amstislavskiy, Tatiana A. Borodina, Alexey Davydov, Ralf Herwig, Matthias Lienhard, Florian Mertes, Marc Sultan, Bernd Timmermann, Marie L. Yaspo, and Hans Lehrach, "An integrated map of genetic variation from 1,092 human genomes," Nature 491 (7422), 56-65 (2012).

Atanas Kamburov, Arndt Grossmann, Ralf Herwig, and Ulrich Stelzl, "Cluster-based assessment of protein-protein interaction confidence," BMC Bioinformatics , 13:262 -13:262 (2012).

Christoph Wierling, Alexander Kühn, Hendrik Hache, Andriani Daskalaki, Elisabeth Maschke-Dutz, Svetlana Peycheva, Jian Li, Ralf Herwig, and Hans Lehrach, "Prediction in the face of uncertainty: a Monte Carlo-based approach for systems biology of cancer treatment," Mutation Research-Genetic Toxixology and Environmental Mutagenesis 746 (2), 163-170 (2012).

Atanas Kamburov, Ulrich Stelzl, and Ralf Herwig, "IntScore: a web tool for confidence scoring of biological interactions," Nucleic Acids Research (London) 40 (Web Server issue), W140-W146 (2012).

Felix Dreher, Thomas Kreitler, Christopher Hardt, Atanas Kamburov, Reha Yildirimman, Karl Schellander, Hans Lehrach, Bodo M. H. Lange, and Ralf Herwig, "DIPSBC--data integration platform for systems biology collaborations," BMC Bioinformatics 13, 13:85 (2012).