Publikationen von Franz-Josef Müller

Björn Brändl, Mara Steiger, Carolin Kubelt, Christian Rohrandt, Zhihan Zhu, Maximilian Evers, Gaojianyong Wang, Bernhard Schuldt, Ann-Kristin Afflerbach, Derek Wong, Amy Lum, Skarphedinn Halldorsson, Luna Djirackor, Henning Leske, Svetlana Magadeeva, Romualdas Smicius, Claudia Quedenau, Nils O. Schmidt, Ulrich Schüller, Einar O. Vik-Mo, Martin Proescholdt, Markus J. Riemenschneider, Gelareh Zadeh, Ole Ammerpohl, Stephen Yip, Michael Synowitz, Alena van Bömmel, Helene Kretzmer, and Franz-Josef Müller, "Rapid brain tumor classification from sparse epigenomic data," Nature Medicine 31 (3), 840-848 (2025).

Maximilian Evers , Björn Brändl, Christian Rohrandt, Carolin Kubelt-Kwamin, Franz-Josef Müller, Dominik Danso, André Maicher , Gaojianyong Wang, Sönke Friedrichsen , and Stephan Kolkenbrock, "Rapid intraoperative amplicon sequencing of CNS tumor markers," Computational and Structural Biotechnology Journal 26, 51-57 (2024).

Hannah Benedictine Maier, Alexandra Neyazi, Gabriel L. Bundies, Fiona Meyer-Bockenkamp, Stefan Bleich, Hansi Pathak, Yvonne Ziert, Barbara Neuhaus, Franz-Josef Müller, Iris et al Pollmann, and Helge Frieling, "Validation of the predictive value of BDNF -87 methylation for antidepressant treatment success in severely depressed patients-a randomized rater-blinded trial," Trials 25 (1), Article 247 (2024).

Lorenz Bastian, Thomas Beder, Malwine J. Barz, Sonja Bendig, Lorenz Bartsch, Wencke Walter, Nadine Wolgast , Björn Brändl, Christian Rohrandt, Björn-Thore Hansen, Alina M. Hartmann, Katharina Iben, Dennis das Gupta, Miriam Denker, Johannes Zimmermann , Michael Wittig, Guranda Chitadze, Martin Neumann, Folker Schneller, Walter Fiedler, Björn Steffen, Matthias Stelljes, Christoph Faul, Stefan Schwartz, Franz-Josef Müller, Gunnar Cario, Lana Harder, Claudia Haferlach, Heike Pfeifer, Nicola Gökbuget, Monika Brüggemann, and Claudia D. Baldus, "Developmental trajectories and cooperating genomic events define molecular subtypes of BCR::ABL1-positive ALL," Blood 143 (14), 1391-1398 (2024).

Jabin Kanczok, Kamila Jauch-Chara, and Franz-Josef Müller, "Imagery rescripting and cognitive restructuring for inpatients with moderate and severe depression - a controlled pilot study," BMC Psychiatry 24 (1), Article 194 (2024).

Ibrahim Avsar Ilik, Petar Glažar, Kevin Tse, Björn Brändl, David Meierhofer, Franz-Josef Müller, Zachary D. Smith, and Tugce Aktas, "Autonomous transposons tune their sequences to ensure somatic suppression," Nature 626 (8001), 1116-1124 (2024).

Ann-Kristin Afflerbach, Christian Rohrandt, Björn Brändl, Marthe Sönksen, Jürgen Hench, Stephan Frank, Daniela Börnigen, Malik Alawi, Martin Mynarek, Beate Winkler, Franz Ricklefs, Michael Synowitz, Lasse Dührsen, Stefan Rutkowski, Annika K. Wefers, Franz-Josef Müller, Melanie Schoof, and Ulrich Schüller, "Classification of Brain Tumors by Nanopore Sequencing of Cell-Free DNA from Cerebrospinal Fluid," Clinical Chemistry 70 (1), 250-260 (2024).

Raha Weigert, Sara Hetzel, Nina Bailly, Chuck Haggerty, Ibrahim A. Ilik, Philip Yuk Kwong Yung, Carmen Navarro, Adriano Bolondi, Abhishek Sampath Kumar, Chiara Anania, Björn Brändl, David Meierhofer, Darío G. Lupiáñez, Franz-Josef Müller, Tugce Aktas, Simon J. Elsässer, Helene Kretzmer, Zachary D. Smith, and Alexander Meissner, "Dynamic antagonism between key repressive pathways maintains the placental epigenome," Nature Cell Biology 25 (4), 579-591 (2023).

Daniel Rosebrock, Sneha Arora, Naresh Mutukula, Rotem Volkman, Elzbieta Gralinska, Anastasios Balaskas, Amèlia Aragonés Hernández, Rene Buschow, Björn Brändl, Franz-Josef Müller, Peter F. Arndt, Martin Vingron, and Yechiel Elkabetz, "Enhanced cortical neural stem cell identity through short SMAD and WNT inhibition in human cerebral organoids facilitates emergence of outer radial glial cells," Nature Cell Biology 24, 981-995 (2022).

Chuck Haggerty, Helene Kretzmer, Christina Riemenschneider, Abhishek Sampath Kumar, Alexandra L. Mattei, Nina Bailly, Judith Gottfreund, Pay Giesselmann, Raha Weigert, Björn Brändl, Pascal Giehr, Rene Buschow, Christina Galonska, Ferdinand von Meyenn, Melissa B. Pappalardi, Michael T. McCabe, Lars Wittler, Claudia Giesecke-Thiel, Thorsten Mielke, David Meierhofer, Bernd Timmermann, Franz-Josef Müller, Jörn Walter, and Alexander Meissner, "Dnmt1 has de novo activity targeted to transposable elements," Nature Structural and Molecular Biology 28 (7), 594-603 (2021).

Jocelyn Charlton, Eunmi J. Jung, Alexandra L. Mattei, Nina Bailly, Jing Liao, Eric J. Martin, Pay Gießelmann, Björn Brändl, Elena K. Stamenova, Franz-Josef Müller, Evangelos Kiskinis, Andreas Gnirke, Zachary D. Smith, and Alexander Meissner, "TETs compete with DNMT3 activity in pluripotent cells at thousands of methylated somatic enhancers," Nature Genetics 52 (8), 819-827 (2020).

Pay Gießelmann, Björn Brändl, Etienne Raimondeau, Rebecca Bowen, Christian Rohrandt, Rashmi Tandon, Helene Kretzmer, Günter Assum, Christina Galonska, Reiner Siebert, Ole Ammerpohl, Andrew Heron, Susanne A. Schneider, Julia Ladewig, Philipp Koch, Bernhard M. Schuldt, James E. Graham, Alexander Meissner, and Franz-Josef Müller, "Analysis of short tandem repeat expansions and their methylation state with nanopore sequencing," Nature Biotechnology 37 (12), 1478-1481 (2019).

Pay Giesselmann, Sara Hetzel, Franz-Josef Müller, Alexander Meissner, and Helene Kretzmer, "Nanopype: A modular and scalable nanopore data processing pipeline," Bioinformatics 35 (22), 4770-4772 (2019).

Michiel Krols, Bob Asselbergh, Riet De Rycke, Vicky De Winter, Alexandre Seyer, Franz-Josef Müller, Ingo Kurth, Geert Bultynck, Vincent Timmerman, and Sophie Janssens, "Sensory neuropathy-causing mutations in ATL3 affect ER-mitochondria contact sites and impair axonal mitochondrial distribution," Human Molecular Genetics 28 (4), 615-627 (2019).

Anika Neureiter, Björn Brändl, Michaela Hiber, Rashmi Tandon, Franz-Josef Müller, and Laura Steenpass, "Generation of an iPSC line of a patient with Angelman syndrome due to an imprinting defect," Stem Cell Research 33, 20-24 (2018).

Rashmi Tandon, Björn Brändl, Natalya Baryshnikova, Alexandro Landshammer, Laura Steenpaß, Oliver Keminer, Ole Pless, and Franz-Josef Müller, "Generation of two human isogenic iPSC lines from fetal dermal fibroblasts," Stem Cell Research 33, 120-124 (2018).

Thomas F. Allison, Peter W. Andrews, Yishai Avior, Ivana Barbaric, Nissim Benvenisty, Christoph Bock, Jennifer Brehm, Oliver Bruestle, Ivan Damjanov, Andrew Elefanty, Daniel Felkner, Paul J. Gokhale, Florian Halbritter, Lyn E. Healy, Tim X. Hu, Barbara B. Knowles, Jeanne F. Loring, Tenneille E. Ludwig, Robyn Mayberry, Suzanne Micallef, Jameelah S. Mohamed, Franz-Josef Müller, Christine L. Mummery, Norio Nakatsuji, Elizabeth S. Ng, Steve K. W. Oh, Orla O'Shea, Martin F. Pera, Benjamin Reubinoff, Paul Robson, Janet Rossant, Bernhard M. Schuldt, Davor Solter, Koula Sourris, Glyn Stacey, Edouard G. Stanley, Hirofumi Suemori, Kazutoshi Takahashi, and Shinya Yamanaka, "Assessment of Established Techniques to Determine Developmental and Malignant Potential of Human Pluripotent Stem Cells," Nature Communications 9 (1), 1925 (2018).

F.-Nora Vögtle, Björn Brändl, Austin Larson, Manuela Pendziwiat, Marisa W. Friederich, Susan M. White, Alice Basinger, Cansu Kücükköse, Hiltrud Muhle, Johanna A. Jähn, Oliver Keminer, Katherine L. Helbig, Carolyn F. Delto, Lisa Myketin, Dirk Mossmann, Nils Burger, Noriko Miyake, Audrey Burnett, Andreas van Baalen, Mark A. Lovell, Naomichi Matsumoto, Maie Walsh, Hung-Chun Yu, Deepali N. Deepali N. Shinde, Ulrich Stephani, Johan L. K. Van Hove, Franz-Josef Müller, and Ingo Helbig, "Mutations in PMPCB Encoding the Catalytic Subunit of the Mitochondrial Presequence Protease Cause Neurodegeneration in Early Childhood," American Journal of Human Genetics 102 (4), 557-573 (2018).

Patrick S. Stumpf, Rosanna C. G. Smith, Michael Lenz, Andreas Schuppert, Franz-Josef Müller, Ann Babtie, Thalia E. Chan, Michael P. H. Stumpf, Colin P. Please, Sam D. Howison, Fumio Arai, and Ben D. MacArthur, "Stem Cell Differentiation as a Non-Markov Stochastic Process," Cell Systems 5 (3), 268-282 (2017).

Christian Rohrandt, Nadine Kraft, Pay Gießelmann, Björn Brändl, Bernhard M. Schuldt, Ulrich Jetzek, and Franz-Josef Müller, "Nanopore SimulatION – a raw data simulator for Nanopore Sequencing", in 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), (2019), pp. 1536 -1543.