Publikationen von Helene Kretzmer

Anat Biran, Shanye Yin, Helene Kretzmer, Elisa ten Hacken, Salma Parvin, Fabienne Lucas, Mohamed Uduman, Catherine Gutierrez, Nathan ... Dangle, Alexander Meissner, and Catherine J. Wu, "Activation of Notch and Myc Signaling via B-cell-Restricted Depletion of Dnmt3a Generates a Consistent Murine Model of Chronic Lymphocytic Leukemia," Cancer Research 81 (24), 6117-6130 (2021).

Daniel Andergassen, Zachary D. Smith, Helene Kretzmer, John L. Rinn, and Alexander Meissner, "Diverse epigenetic mechanisms maintain parental imprints within the embryonic and extraembryonic lineages," Developmental Cell 56 (21), 2995-3005 (2021).

Sara Hetzel, Pay Gießelmann, Knut Reinert, Alexander Meissner, and Helene Kretzmer, "RLM: Fast and simplified extraction of Read-Level Methylation metrics from bisulfite sequencing data," Bioinformatics 37 (21), 3934-3935 (2021).

Hua-Jun Wu, Alexandro Landshammer, Elena K. Stamenova, Adriano Bolondi, Helene Kretzmer, Alexander Meissner, and Franziska Michor, "Topological isolation of developmental regulators in mammalian genomes," Nature Communications 12, 4897 (2021).

Chuck Haggerty, Helene Kretzmer, Christina Riemenschneider, Abhishek Sampath Kumar, Alexandra L. Mattei, Nina Bailly, Judith Gottfreund, Pay Giesselmann, Raha Weigert, Björn Brändl, Pascal Giehr, Rene Buschow, Christina Galonska, Ferdinand von Meyenn, Melissa B. Pappalardi, Michael T. McCabe, Lars Wittler, Claudia Giesecke-Thiel, Thorsten Mielke, David Meierhofer, Bernd Timmermann, Franz-Josef Müller, Jörn Walter, and Alexander Meissner, "Dnmt1 has de novo activity targeted to transposable elements," Nature Structural and Molecular Biology 28 (7), 594-603 (2021).

Adriano Bolondi, Leah Haut, Seher Ipek Gassaloglu, Polly Burton, Helene Kretzmer, Rene Buschow, Alexander Meissner, Bernhard G. Herrmann, and Jesse V. Veenvliet, "Generation of Mouse Pluripotent Stem Cell-derived Trunk-like Structures: An in vitro Model of Post-implantation Embryogenesis," Bio-protocol 11 (11), e4042 (2021).

Daniel Hübschmann, Kortine Kleinheinz, Rabea Wagener, Stephan H. Bernhart, Cristina López, Umut H. Toprak, Stephanie Sungalee, Naveed Ishaque, Helene Kretzmer, Markus Kreuz, Sebastian M. Waszak, Nagarajan Paramasivam, Ole Ammerpohl, Sietse M. Aukema, Renée Beekman, Anke K. Bergmann, Matthias Bieg, Hans Binder, Arndt Borkhardt, Christoph Borst, Benedikt Brors, Philipp Bruns, Enrique Carrillo de Santa Pau, Alexander Claviez, Gero Doose, Andrea Haake, Dennis Karsch, Siegfried Haas, Martin-Leo Hansmann, Jessica I. Hoell, Volker Hovestadt, Bingding Huang, Michael Hummel, Christina Jäger-Schmidt, Jules N. A. Kerssemakers, Jan O. Korbel, Dieter Kube, Chris Lawerenz, Dido Lenze, Joost H. A. Martens, German Ott, Bernhard Radlwimmer, Eva Reisinger, Julia Richter, Daniel Rico, Philip Rosenstiel, Andreas Rosenwald, Markus Schillhabel, Stephan Stilgenbauer, Peter F. Stadler, José I. Martín-Subero, Monika Szczepanowski, Gregor Warsow, Marc A. Weniger, Marc Zapatka, Alfonso Valencia, Hendrik G. Stunnenberg, Peter Lichter, Peter Möller, Markus Loeffler, Roland Eils, Wolfram Klapper, Steve Hoffmann, Lorenz Trümper, ICGC MMML-Seq consortium, ICGC DE-Mining consortium, BLUEPRINT consortium, Ralf Küppers, Matthias Schlesner, and Reiner Siebert, "Mutational mechanisms shaping the coding and noncoding genome of germinal center derived B-cell lymphomas," Leukemia: the Journal of Normal and Malignant Hemopoiese ; Official Journal of the Leukemia Research Fund U.K. 35 (7), 2002-2016 (2021).

Helene Kretzmer, Anat Biran, Noelia Purroy, Camilla K. Lemvigh, Kendell Clement, Michaela Gruber, Hongcang Gu, Laura Rassenti, Arman W. Mohammad, Connie Lesnick, Susan L. Slager, Esteban Braggio, Tait D. Shanafelt, Neil E. Kay, Stacey M. Fernandes, Jennifer R. Brown, Lili Wang, Shuqiang Li, Kenneth J. Livak, Donna S. Neuberg, Sven Klages, Bernd Timmermann, Thomas J. Kipps, Elias Campo, Andreas Gnirke, Catherine J. Wu, and Alexander Meissner, "Pre-neoplastic alterations define CLL DNA methylome and persist through disease progression and therapy," Blood Cancer Discovery 2 (1), 54-69 (2021).

Jesse V. Veenvliet, Adriano Bolondi, Helene Kretzmer, Leah Haut, Manuela Scholze-Wittler, Dennis Schifferl, Frederic Koch, Léo Guignard, Abhishek Sampath Kumar, Milena Pustet, Simon Heimann, Rene Buschow, Lars Wittler, Bernd Timmermann, Alexander Meissner, and Bernhard G. Herrmann, "Mouse embryonic stem cells self-organize into trunk-like structures with neural tube and somites," Science 370 (6522), eaba4937 (2020).

Konstantin Riege, Helene Kretzmer, Arne Sahm, Simon S. McDade, Steve Hoffmann, and Martin Fischer, "Dissecting the DNA binding landscape and gene regulatory network of p63 and p53," eLife 9, e63266 (2020).

Stefanie Grosswendt, Helene Kretzmer, Zachary D. Smith, Abhishek Sampath Kumar, Sara Hetzel, Lars Wittler, Sven Klages, Bernd Timmermann, Shankar Mukherji, and Alexander Meissner, "Epigenetic regulator function through mouse gastrulation," Nature 584, 102-108 (2020).

Pay Gießelmann, Björn Brändl, Etienne Raimondeau, Rebecca Bowen, Christian Rohrandt, Rashmi Tandon, Helene Kretzmer, Günter Assum, Christina Galonska, Reiner Siebert, Ole Ammerpohl, Andrew Heron, Susanne A. Schneider, Julia Ladewig, Philipp Koch, Bernhard M. Schuldt, James E. Graham, Alexander Meissner, and Franz-Josef Müller, "Analysis of short tandem repeat expansions and their methylation state with nanopore sequencing," Nature Biotechnology 37 (12), 1478-1481 (2019).

Anat Biran, Helene Kretzmer, Shanye Yin, Leah Billington, Fara Faye Regis, Arman W. Mohammad, Andreas Gnirke, Donna S. Neuberg, Ruben D. Carrasco, Alexander Meissner, and Catherine J. Wu, "Deciphering the Role of Locally Disordered DNA Methylation on CLL Development In Vivo," Blood 134 (Suppl. 1), 1737-1737 (2019).

Pay Giesselmann, Sara Hetzel, Franz-Josef Müller, Alexander Meissner, and Helene Kretzmer, "Nanopype: A modular and scalable nanopore data processing pipeline," Bioinformatics 35 (22), 4770-4772 (2019).

Michelle M. Chan, Zachary D. Smith, Stefanie Grosswendt, Helene Kretzmer, Thomas M. Norman, Britt Adamson, Marco Jost, Jeffrey J. Quinn, Dian Yang, Matthew G. Jones, Alex Khodaverdian, Yosef Nir, Alexander Meissner, and Jonathan S. Weissman, "Molecular recording of mammalian Embryogenesis," Nature 570 (7759), 77-82 (2019).

Binyamin A. Knisbacher, Ziao Lin, Cynthia K. Hahn, Ferran Nadeu, Martí Duran-Ferrer, Kristen E. Stevenson, Eugen Tausch, Alex Barbera-Mourelle, Andrew Dunford, Shankara Anand, Julio Delgado, Julian M. Hess, Amaro Taylor-Weiner, Helene Kretzmer, Pablo Bousquets Muñoz, Conner J. Shaughnessy, Stacey M. Fernandes, Mariela Sivina, Laura Z. Rassenti, Alexander Meissner, Adrian ... Wiestner, and Gad Getz, "The CLL-1100 Project: Towards Complete Genomic Characterization and Improved Prognostics for CLL", in Blood, (American Society of Hematology, Washington, DC, 2020), Vol. 136.

Carolin Kubelt , Björn Brändl , Alena van Bömmel , Christian Rohrandt, Gaojianyong Wang, Maximilian Evers , Stephan Kolkenbrock , Derek Wong, Dominik Danso, Andre Maicher, Sönke Friedrichsen , Martin Proescholdt , Markus Riemenschneider , Ulrich Jetzek, Alexander Meissner, Stephen Yip , Helene Kretzmer, Michael Synowitz, and Franz-Josef Müller, "INTRAEPIGLIOM - RAPID SEQUENCING-BASED DIAGNOSIS OF BRAIN TUMORS", in Neuro-Oncology: official journal of the World Federation of Neuro-Oncology, (Oxford: Oxford Univ. Press, USA, 2022), Vol. 24, pp. 160-161.

Pauline Hübner, Association Plots – A Method to Detect Tissue-Specific Regulatory Patterns?, Master Thesis, 2024.

Adriano Bolondi, Helene Kretzmer, and Alexander Meissner, "Single-cell technologies: a new lens into epigenetic regulation in development", in Current Opinion in Genetics & Development, (Elsevier Current Trends, London, 2022), Vol. 76.