Publications of Martin Vingron

Zhang, J.; Vingron, M.; Hoehe, M. R.: Haplotype reconstruction for diploid populations. Human Heredity 59 (3), pp. 144 - 156 (2005)

Roepcke, S.; Grossmann, S.; Rahmann, S.; Vingron, M.: T-Reg Comparator: an analysis tool for the comparison of position weight matrices. Web Server Issue, pp. W438 - W341 (2005)

Roepcke, S.; Fiziev, P.; Seeburg, P. H.; Vingron, M.: SVC: structured visualization of evolutionary sequence conservation. Web Server Issue, pp. W271 - W273 (2005)

Belyakin, S. N.; Christophides, G. K.; Alekseyenko, A. A.; Kriventseva, E. V.; Belyaeva, E. S.; Nanayev, R. A.; Makunin, I. V.; Hild, M.; Beckmann, B.; Haas, S. A. et al.; Koch, B.; Solovyev, V.; Busold, C.; Fellenberg, K.; Boutros, M.; Vingron, M.; Sauer, F.; Hoheisel, J. D.; Paro, R.: Genomic analysis of Drosophila chromosome underreplication reveals a link between replication control and transcriptional territories. Proceedings of the National Academy of Sciences 107 (23), pp. 8269 - 8274 (2005)

Dieterich, C.; Grossmann, S.; Tanzer, A.; Röpcke, S.; Arndt, P. F.; Stadler, P. F.; Vingron, M.: Comparative promoter region analysis powered by CORG. BMC Gnomics 6, p. 24 - 24 (2005)

Krause, A.; Stoye, J.; Vingron, M.: Large Scale Hierarchical Clustering of Protein Sequences. BMC Bioinformatics 6, p. 15 - 15 (2005)

Gupta, S.; Vingron, M.; Haas, S. A.: T-STAG: resource and web-interface for tissue-specific transcripts and genes. Nucleic Acids Research 33 ((Web Server Issue)), pp. W654 - W658 (2005)

Michael, M.; Dieterich, C.; Vingron, M.: SITEBLAST-rapid and sensitive local alignment of genomic sequences employing motif anchors. Bioinformatics 21 (9), pp. 2093 - 2094 (2005)

Sueltmann, H.; von Heydebreck, A.; Huber, W.; Kuner, R.; Buness, A.; Vogt, M.; Gunawan, B.; Vingron, M.; Fuezesi, L.; Poustka, A.: Gene Expression in Kidney Cancer Is Associated with Cytogenetic Abnormalities, Metastasis Formation, and Patient Survival. Clinical Cancer Research 11 (2 Pt 1), pp. 646 - 655 (2005)

Philippar, U.; Schratt, G.; Dieterich, C.; Müller, J. M.; Galgóczy, P.; Engel, F. B.; Keating, M. T.; Gertler, F.; Schüle, R.; Vingron, M. et al.; Nordheim, A.: The SRF target gene Fhl2 antagonizes RhoA/MAL-dependent activation of SRF. Molecular Cell 16 (12), pp. 867 - 880 (2004)

Gupta, S.; Zink, D.; Korn, B.; Vingron, M.; Haas, S. A.: Strengths and weaknesses of EST-based prediction of tissue-specific alternative splicing. BMC Genomics 5, p. 72 - 72 (2004)

Rateitschak, K.; Mueller, T.; Vingron, M.: Annotating significant pairs of transcription factor binding sites in regulatory DNA. Special Issue: Ontology Workshop Tokyo 2003, p. 0040 - 0040 (2004)

Gupta, S.; Zink, D.; Korn, B.; Vingron, M.; Haas, S. A.: Genome wide identification and classification of alternative splicing based on EST data. Bioinformatics 20 (16), pp. 2579 - 2585 (2004)

Crass, T.; Antes, I.; Basekow, R.; Bork, P.; Buning, C.; Christensen, M.; Claußen, H.; Ebeling, C.; Ernst, P.; Gailus-Durner, V. et al.; Glatting, K.-H.; Gohla, R.; Gößling, F.; Grote, K.; Heidtke, K.; Herrmann, A.; O'Keeffe, S.; Kießlich, O.; Kolibal, S.; Korbel, J. O.; Lengauer, T.; Liebich, I.; van der Linden, M.; Luz, H.; Meissner, K.; von Mering, C.; Mevissen, H.-T.; Mewes, H.-W.; Michael, H.; Mokrejs, M.; Müller, T.; Pospisil, H.; Rarey, M.; Reich, J. G.; Schneider, R.; Schomburg, D.; Schulze-Kremer, S.; Schwarzer, K.; Sommer, I.; Springstubbe, S.; Suhai, S.; Thoppae, G.; Vingron, M.; Warfsmann, J.; Werner, T.; Wetzler, D.; Wingender, E.; Zimmer, R.: The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources. Bioinformatics 20 (2), pp. 268 - 270 (2004)

Hermjakob, H.; Montecchi-Palazzi, L.; Lewington, C.; Mudali, S.; Kerrien, S.; Orchard, S.; Vingron, M.; Roechert, B.; Roepstorff, P.; Valencia, A. et al.; Margalit, H.; Armstrong, J.; Bairoch, A.; Cesareni, G.; Sherman, D.; Apweller, R.: IntAct: an open source molecular interaction database. Nucleic Acids Research 32 (Sp. Iss. SI), pp. D452 - D455 (2004)

von Heydebreck, A.; Sperling, S.; Kaynak, B.; Lehrach, H.; Vingron, M.: Genexpressionsanalyse komplexer klinischer Phänotypen mittels cDNS-Arrays - Gene Expression Profiling of Complex Clinical Phenotypes using cDNA-Arrays. it - Information Technology 46 (1), pp. 26 - 30 (2004)

Xue, Y. T.; Haas, S.; Brino, L.; Gusnanto, A.; Riemers, M.; Talibi, D.; Vingron, M.; Ekwall, K.; Wright, A. P. H.: A DNA microarray for fission yeast: minimal changes in global gene expression after temperature shift. Yeast 21 (1), pp. 25 - 39 (2004)

Hild, M.; Beckmann, B.; Haas, S. A.; Koch, B.; Solovyev, V.; Busold, C.; Fellenberg, K.; Boutros, M.; Vingron, M.; Sauer, F. et al.; Hoheisel, J. D.; Paro, R.: An integrated gene annotation and transcriptional profiling approach towards the full gene content of the Drosophila genome. Genome Biology 5 (1), p. R3 - R3 (2003)

Manke, T.; Bringas, R.; Vingron, M.: Correlating protein-DNA and protein-protein interaction networks. Journal of Molecular Biology 333 (1), pp. 75 - 85 (2003)

Haas, S. A.; Hild, M.; Wright, A. P. H.; Hain, T.; Talibi, D.; Vingron, M.: Genome-scale design of PCR primers and long oligomers for DNA microarrays. Nucleic Acids Research 31 (19), pp. 5576 - 5581 (2003)