Publications of Martin Vingron
All genres
Journal Article (217)
141.
Journal Article
15 (6), pp. 547 - 564 (2008)
Compound Poisson Approximation of the Number of Occurrences of a Position Frequency Matrix (PFM) on Both Strands. Journal of Computational Biology: A Journal of Computational Molecular Cell Biology 142.
Journal Article
18 (10), pp. 1582 - 1591 (2008)
Early vertebrate whole genome duplications were predated by a period of intense genome rearrangement. Genome Research 143.
Journal Article
3 (9), p. e3210 - e3210 (2008)
Transcriptional Autoregulatory Loops Are Highly Conserved in Vertebrate Evolution. PLoS One 144.
Journal Article
321 (5891), pp. 956 - 960 (2008)
A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome. Science 145.
Journal Article
3 (7), p. e2780 - e2780 (2008)
Comparative 3’UTR analysis allows identification of regulatory clusters that drive Eph/ephrin expression in cancer cell lines. PLoS One 146.
Journal Article
18 (2), p. 026113 - 026113 (2008)
Self-correcting networks: Function, robustness, and motif distributions in biological signal processing. Chaos: an Interdisciplinary Journal of Nonlinear Sciencc 147.
Journal Article
4 (6), pp. 589 - 598 (2008)
Prediction of cardiac transcription networks based on molecular data and complex clinical phenotypes. Molecular BioSystems: A New High Quality Chemical Biology Journal with A Particular Focus on the Interface between Chemistry and the -Omic Sciences and Systems Biology 148.
Journal Article
4 (3), p. e1000039 - e1000039 (2008)
Statistical Modeling of Transcription Factor Binding Affinities Predicts Regulatory Interactions. PLoS Computational Biology 149.
Journal Article
18 (7), pp. 1143 - 1149 (2008)
Mapping translocation breakpoints by next-generation sequencing. Genome Research 150.
Journal Article
9 (3), pp. 250 - 253 (2008)
The BREW workshop series: a stimulating experience in PhD education. Briefings in Bioinformatics 151.
Journal Article
24 (3), pp. 350 - 357 (2008)
Natural similarity measures between position frequency matrices with an application to clustering. Bioinformatics 152.
Journal Article
8 (Suppl) (6), p. S1 - S1 (2007)
The Otto Warburg International Summer School and Workshop on Networks and Regulation. BMC Bioinformatics 153.
Journal Article
8, p. e392 - e392 (2007)
Exonization of active mouse L1s: a driver of transcriptome evolution? BMC Genomics 154.
Journal Article
23 (22), pp. 3024 - 3031 (2007)
Improved detection of overrepresentation of Gene-Ontology annotations with parent child analysis. Bioinformatics 155.
Journal Article
32 (Suppl. 1), pp. 841 - 850 (2007)
Incorporating evolution of transcription factor binding sites into annotated alignments. Journal of Bioscience 156.
Journal Article
23 (13), pp. i80 - i86 (2007)
A physical model for tiling array analysis. Bioinformatics 157.
Journal Article
14 (5), pp. 655 - 668 (2007)
Effects of Long-Range Correlations in DNA on Sequence Alignment Score Statistics. Journal of Computational Biology: A Journal of Computational Molecular Cell Biology 158.
Journal Article
23 (2), pp. e44 - e49 (2007)
Simultaneous alignment and annotation of cis-regulatory regions. Bioinformatics 159.
Journal Article
23 (2), pp. 134 - 141 (2007)
Predicting transcription factor affinities to DNA from a biophysical model. Bioinformatics 160.
Journal Article
E75, 015101 (2007)
Design and statistical properties of robust functional networks: A model study of biological signal transduction. Physical Review: E, Statistical, Nonlinear and Soft Matter Physics