Selected Publications

Kraft, K.*, Murphy S.E*, Jones, M.G*., … Boettiger A.N., .Chang, H.Y. (2024)

Enhancer activation from transposable elements in extrachromosomal DNA

Biorxiv, accepted in Nature Cell Biology.

Murphy S.E, Boettiger AN. (2024)

Polycomb repression of Hox genes involves spatial feedback but not domain compaction or phase transition.

Nature Genetics

Kraft, K*., Yost, K.E*., Murphy, S.E., Magg, A., Long, Y.,...Chang, H.Y. (2022)

Polycomb-mediated Genome Architecture Enables Long-range Spreading of H3K27 methylation.

PNAS

Rajpurkar A.R., Mateo L.J., Murphy S.E, Boettiger AN. (2021)

Deep learning connects DNA traces to transcription to reveal predictive features beyond enhancer–promoter contact.

Nature Communications

Boettiger, A.N., Murphy, S.E. (2020)

Advances in chromatin imaging at kilobase-scale resolution

Trends in Genetics

Mateo, L.J., Murphy, S.E., Hafner, A.; Cinquini, I., Walker, C., and Boettiger, A. (2019 )

Visualizing DNA folding and transcription in embryogenesis at single-cell resolution.

Nature

Selected publications