Publications

Journal Article

Alberge, J.-B.; Dutta, A.; Poletti, A.; Coorens, T. H. H.; Lightbody, E.; Toenges, R.; Loinaz, X.; Wallin, S.; Dunford, A.; Priebe, O. et al.; Dagan, J.; Boehner, C. J.; Horowitz, E.; Su, N. K.; Barr, H.; Hevenor, L.; Towle, K.; Beesam, R.; Beckwith, J. B.; Perry, .; Cordas dos Santos, D. M.; Bertamini, L.; Greipp , . T.; Kübler, K.; Arndt, P. F.; Terragna, C.; Zamagni, E.; Boyle, E.; Yong, K.; Morgan, G.; Walker, B. A.; Dimopoulos, M.; Kastritis, E.; Hess, J.; Sklavenitis-Pistofidis, R.; Stewart, C.; Getz, G.; Ghobrial, I. M.: Genomic landscape of multiple myeloma and its precursor conditions. Nature Genetics (2025)

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Journal Article

Abdullaev, E. T.; Haridoss, D. A.; Arndt, P. F.: Reconstruction of Segmental Duplication Rates and Associated Genomic Features by Network Analysis. Genome Biology and Evolution 17 (3), Article evaf011 (2025)

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Ulicevic, J.; Shao, Z.; Jasnovidova, O.; Bressin, A.; Gajos, M.; Ng, A. H.; Annaldasula, S.; Meierhofer, D.; Church, G. M.; Busskamp, V. et al.; Mayer, A.: Uncovering the dynamics and consequences of RNA isoform changes during neuronal differentiation. Molecular Systems Biology 20 (7), pp. 767 - 798 (2024)

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Rosebrock, D.; Vingron, M.; Arndt, P. F.: Modeling gene expression cascades during cell state transitions. iScience 27 (4), Article 109386 (2024)

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Sheinman, M.; Arndt, P. F.; Massip, F.: Modeling the mosaic structure of bacterial genomes to infer their evolutionary history. PNAS 121 (13), Article e2313367121 (2024)

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Rosebrock, D.; Arora, S.; Mutukula, N.; Volkman, R.; Gralinska, E.; Balaskas, A.; Aragonés Hernández, A.; Buschow, R.; Brändl, B.; Müller, F.-J. et al.; Arndt, P. F.; Vingron, M.; Elkabetz, Y.: Enhanced cortical neural stem cell identity through short SMAD and WNT inhibition in human cerebral organoids facilitates emergence of outer radial glial cells. Nature Cell Biology 24 (6), pp. 981 - 995 (2022)

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Abdullaev, E.; Umarova, I. R.; Arndt, P. F.: Modelling segmental duplications in the human genome. BMC Genomics 22 (1), Article 496 (2021)

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Sheinman, M.; Arkhipova, K.; Arndt, P. F.; Dutilh, B. E. ..; Hermsen, R.; Massip, F.: Identical sequences found in distant genomes reveal frequent horizontal transfer across the bacterial domain. eLife 10, Article e62719 (2021)

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Arndt, P. F.: Sequential and continuous time stick-breaking. Journal of Statistical Mechanics: Theory and Experiment 6 (6), Article 064003 (2019)

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Smith, T. C. A.; Arndt, P. F.; Eyre-Walker, A.: Large scale variation in the rate of germ-line de novo mutation, base composition, divergence and diversity in humans. PLoS Genetics 14 (3), e1007254 (2018)

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Kuruoglu, E. E.; Arndt, P. F.: The information capacity of the genetic code: Is the natural code optimal? Journal of Theoretical Biology 419, pp. 227 - 237 (2017)

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Massip, F.; Sheinman, M.; Schbath, S.; Arndt, P.: Comparing the Statistical Fate of Paralogous and Orthologous Sequences. Genetics 204 (2), pp. 475 - 482 (2016)

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Moorjani, P.; Amorim, C. E.; Arndt, P. F.; Przeworski, M.: Variation in the molecular clock of primates. Proceedings of the National Academy of Sciences of the United States of America 113 (38), pp. 10607 - 10612 (2016)

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Sheinman, M.; Ramisch, A.; Massip, F.; Arndt, P. F.: Evolutionary dynamics of selfish DNA explains the abundance distribution of genomic subsequences. Scientific Reports 6, 30851 (2016)

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Glémin, S.; Arndt, P. F.; Messer, P. W.; Petrov, D.; Galtier, N.; Duret, L.: Quantification of GC-biased gene conversion in the human genome. Genome Research 25 (8), pp. 1215 - 1228 (2015)

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Francioli, L. C.; Polak, P. P.; Koren, A.; Menelaou, A.; Chun, S.; Renkens, I.; Genome of the Netherlands, C.; van Duijn, C. M.; Swertz, M.; Wijmenga, C. et al.; van Ommen, G.; Slagboom, P. E.; Boomsma, D. I.; Ye, K.; Guryev, V.; Arndt, P. F.; Kloosterman, W. P.; de Bakker, P. I.; Sunyaev, S. R.: Genome-wide patterns and properties of de novo mutations in humans. Nature Genetics 47 (7), pp. 822 - 826 (2015)

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Sheinman, M.; Massip, F.; Arndt, P. F.: Statistical properties of pairwise distances between leaves on a random Yule tree. PLoS One 10 (3), e0120206 (2015)

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Massip, F.; Sheinman, M.; Schbath, S.; Arndt, P. F.: How evolution of genomes is reflected in exact DNA sequence match statistics. Mol Biol Evol 32 (2), pp. 524 - 535 (2015)

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Journal Article

Mugal, C. F.; Arndt, P. F.; Holm, L.; Ellegren, H.: Evolutionary consequences of DNA methylation on the GC content in vertebrate genomes. G3: Genes, Genomes, Genetics 5 (3), pp. 441 - 447 (2015)

MPG.PuRe