Meissner Lab - Publikationsliste

Heß, A.; Seelow, D.; Kretzmer, H.: DNAvi: integration, statistics, and visualization of cell-free DNA fragment traces. Bioinformatics (2026)

Iyer, D. P.; Heidari Khoei, H.; Rivron, N.; Bulut-Karslioglu, A.: Putting mammalian early embryonic cells into dormancy. Nature Protocols (2026)

Sashittal, P.; Zhang, R. Y.; Law, B. K.; Schmidt, H.; Strzalkowski, A.; Bolondi, A.; Chan, M. M.; Raphael, B. J.: Inferring cell differentiation maps from lineage tracing data. Nature Methods (2025)

Swanepoel , C. M.; Wang, G.; Zhang, L.; Brändl, B.; Bauer, H.; Tsaytler, P.; Müller, F.-J.; Herrmann, B. G.; Mueller, J. L.: Acquisition of ampliconic sequences marks a selfish mouse t-haplotype. Nature Communications 17, 21 (2025)

Kraushar, M. L.: The on-site, on-demand, neuronal gene machine. Nature Reviews Neuroscience (2025)

Lin, Y.-Y.; Breuer, K.; Weichenhan, D.; Lafrenz, P.; Sarnataro, A.; Wilk, A.; Chepeleva, M.; Mücke, O.; Schönung, M.; Petermann, F. et al.; Kensche, P. R.; Weiser, L.; Thommen, .; Giacomelli, G.; Nordstroem, K.; Gonzalez-Avalos, E.; Merkel, A.; Kretzmer, H.; Fischer, J.; Krämer, S.; Iskar, M.; Wolf, S.; Buchhalter, I.; Esteller, M.; Lawerenz, C.; Twardziok, S.; Zapatka, M.; Hovestadt, V.; Schlesner, M.; Schulz, M. H.; Hoffmann, S.; Gerhause, C.; Walter, J.; Hartmann, M.; Lipka, D. B.; Assenov, Y.; Bock, C.; Plass, C.; Toth, R.; Lutsik, P.: Pipeline Olympics: continuable benchmarking of computational workflows for DNA methylation sequencing data against an experimental gold standard. Nucleic Acids Research 53 (2025)

Biswas, A.; Muñoz, O.; Kim, K.; Hoege, C.; Lorton, B. M.; Nikolay, R.; Kraushar, M. L.; Shechter, D.; Guck, J.; Zaburdaev, V. et al.; Reber, S.: Conserved nucleocytoplasmic density homeostasis drives cellular organization across eukaryotes. Nature Communications 16, 7597 (2025)

Guckelberger, P.; Haut, L.; Tornisiello, R.; Kretzmer, H.; Meissner, A.: HELLS is required for maintaining proper DNA modification at human satellite repeats. Genome Biology (26) (2025)

Hetzel, S.; Hodis , E.; Torlai Triglia, E.; Kovacsovics, A.; Steinmann , K.; Gnirke, A.; Cui, M.; McQuaid, D.; Weigert, R.; Pohl, G. et al.; Muzumdar, M. D.; Leyvraz, S.; Keilholz, U.; Yaspo, M.-L.; Regev, A.; Kretzmer, H.; Smith, Z.; Meissner, A.: Direct genetic transformation bypasses tumor-associated DNA methylation alterations. Genome Biology (26) (2025)

Rossi, F.; Magalhães, A. P.; Buschow, R.; Schubert , T.; Glaser, L. V.; Fontana, A.; Mai , J.; Staege, H.; Grimme, A.; Will, H. et al.; Schriener, .; Hnisz, D.; Vingron, M.; Chiariello, A. M.; Kinkley, S.: Differential oligomerization regulates PHF13 chromatin affinity and function. Nucleic Acids Research 53 (12) (2025)

Yagi, M.; Bonilla, G.; Hoetker, M. S.; Tsopoulidis, N.; Horng, J. E.; Haggerty, C.; Meissner, A.; Sadreyev, R. I.; Hock, H.; Hochedlinger, K.: Bivalent chromatin instructs lineage specification during hematopoiesis. Cell (2025)

Zhang, Y.; Stöppelkamp, I.; Fernandez-Pernas, P.; Allram, M.; Charman, M.; Magalhães, A. P.; Piedavent-Salomon, M.; Sommer, G.; Sung, Y.-C.; Meyer, K. et al.; Grams, N.; Halko, E.; Dongre, S.; Meierhofer, D.; Malszycki, M.; Ilik, I. A.; Aktas, T.; Kraushar, M. L.; Vastenhouw, N.; Weitzman, M. D.; Grebien, F.; Niskanen, H.; Hnisz, D.: Probing condensate microenvironments with a micropeptide killswitch. Nature (2025)

Magalhães, A. P.; Hnisz, D.: Transcription factor condensates: Preventing aggregation by DNA binding. Cell (188), S. 2831 - 2833 (2025)

Wang, G.; Korody, M. L.; Brändl, B.; Hernandez-Toro, C. J.; Rohrandt, C.; Hong, K.; Pang, A. W. C.; Lee, J.; Migliorelli, G.; Stanke, M. et al.; Ford, S. M.; Pollmann, I.; Houck, M. L.; Lewin, H. A.; Lear, T. L.; Ryder, O. A.; Meissner, A.; Loring, J. F.; Müller, F.-J.: Genomic map of the functionally extinct northern white rhinoceros (Ceratotherium simum cottoni). Proceedings of the National Academy of Sciences of the United States of America 122 (20) (2025)

Chteinberg, E.; Kolarova, J.; Vogt, J.; Macamo, A.; Bormann, F.; Kretzmer, H.; Speel, E. J.; van den Oord, J.; Schneider, C.; Stilgenbauer, S. et al.; Becker, J. C.; Winnepenninckx, V.; Biessen, E.; Zenke, M.; Kurz, A. K.; Siebert, R.; Zur Hausen , A.: The significance of PAX5 in Merkel cell carcinoma. The Journal of Pathology: an Official Journal of the Pathological Society of Great Britain and Ireland 266 (1), S. 81 - 94 (2025)

Villaronga-Luque, A.; Savill, R. G.; López-Anguita, N.; Bolondi, A.; Garai, S.; Gassaloglu, S. I.; Rouatbi, R.; Schmeisser, K.; Poddar, A.; Bauer, L. et al.; Alves, T.; Traikov, S.; Rodenfels, J.; Chavakis, T.; Bulut-Karslioglu, A.; Veenvliet, J. V.: Integrated molecular-phenotypic profiling reveals metabolic control of morphological variation in a stem-cell-based embryo model. Cell Stem Cell 32 (5), S. 759 - 777 (2025)

Glaser , S.; Fischer, A.; Martínez-Manjón, J. E.; López, C.; Kretzmer, H.; Burkhardt, B.; Hübschmann, D.; Hummel, M.; Klapper, W.; Kolarova, J. et al.; Kreuz, M.; Ott, G. e. a.: Subgrouping germinal center-derived B-cell lymphomas based on machine learning-deduced DNA methylation modules. Leukemia 39 (4), S. 967 - 971 (2025)

Brändl, B.; Steiger, M.; Kubelt, C.; Rohrandt, C.; Zhu, Z.; Evers, M.; Wang, G.; Schuldt, B.; Afflerbach, A.-K.; Wong, D. et al.; Lum, A.; Halldorsson, S.; Djirackor, L.; Leske, H.; Magadeeva, S.; Smicius, R.; Quedenau, C.; Schmidt, N. O.; Schüller, U.; Vik-Mo, E. O.; Proescholdt, M.; Riemenschneider, M. J.; Zadeh, G.; Ammerpohl, O.; Yip, S.; Synowitz, M.; van Bömmel, A.; Kretzmer, H.; Müller, F.-J.: Rapid brain tumor classification from sparse epigenomic data. Nature Medicine 31 (3), S. 840 - 848 (2025)

Lauer, S. M.; Gasse, J.; Krizsan, A.; Reepmeyer, M.; Sprink, T.; Nikolay, R.; Spahn, C. M. T.; Hoffmann, R.: The proline-rich antimicrobial peptide Api137 disrupts large ribosomal subunit assembly and induces misfolding. Nature Communications 16 (1), Article 567 (2025)

McIntyre, A. B. R.; Tschan, A. B.; Meyer, K.; Walser, S.; Rai, A. K.; Fujita, K.; Pelkmans, L.: Phosphorylation of a nuclear condensate regulates cohesion and mRNA retention. Nature Communications 16 (1), Article 390 (2025)