Meissner Lab - Publikationsliste

Drewes, C.; López, C.; Okeke, N.; Jebaraj, B.; Wiegreffe, C.; Kraus, I. .; Hillebrecht, S.; Awada, A.; Bens, S.; Chteinberg, E. et al.; Eichhorst, B.; Datismann, S.; Dyer, M. J. S.; Fischer, A.; Fischer, K.; Glaser, S.; Hallek, M.; Kretzmer, H.; Mottok, A.; Pfaff, D.; Schnitzler, K.; Meier-Kolthoff, J. P.; Schlesner, M.; Schneider, C.; Britsch, S.; Ammerpohl, O.; Stilgenbauer, S.; Tausch, E.; Siebert, R.: The spectrum of immunoglobulin heavy chain enhancer hijacking in chronic lymphocytic leukemia. Leukemia (2026)

Tornisiello, R.; Kretzmer, H.: scGeno: a Hidden Markov Model approach to denoise chromosome-scale genotypes from single-cell data. Bioinformatics Advances (2026)

Cowley, C. J.; Sajjath, S. M.; Soto-Ugaldi, L. F.; Steiger, M.; Larsen, S. B.; Carroll, T.; Barrows, D.; Mattei, A. L.; Gonzales, K. A. U.; Wang, W. et al.; Li, K.; Meissner, A.; Kretzmer, H.; Pe’er, D.; Fuchs, E.: Distinctive DNA sequence features define epigenetic longevity of inflammatory memory. Science 391 (2026)

Bielskutė-García, S.; Mateos, B.; Awawdy, M.; Garcia-Cabau, C.; Niskanen, H.; Sánchez-Zarzalejo, C.; Bracaglia, L.; Pierattelli, R.; Felli, I. C.; Frigolé-Vivas, M. et al.; García, J.; Riera, A.; Hnisz, D.; Salvatella, X.: Oligomerization enables the selective targeting of an intrinsically disordered region by a small molecule. Science Advances 12 (2026)

Steiger, M.; Singh, N.; Tyers, A. M.; Kretzmer, H.; Valenzano, D. R.; Meissner, A.: The DNA methylation landscape of naturally short-lived killifish. Scientific Reports 16, 7173 (2026)

Heß, A.; Kovacsovics, A.; Bachinger, F.; Vallier, L.; Kretzmer, H.; Meissner, A.: Non-disruptive in vitro monitoring of cellular states with cell-free DNA methylation. Genome Biology 27, 59 (2026)

Heß, A.; Seelow, D.; Kretzmer, H.: DNAvi: integration, statistics, and visualization of cell-free DNA fragment traces. Bioinformatics (2026)

Braun, S.; Kilchert, C.; Bulut-Karslioglu, A.; Ruault, M.; Taddei, A.; Rabbani, F.; Włoch-Salamon, D.: Nuclear Dynamics in Quiescent Cells: Conserved Mechanisms from Yeasts to Mammals. Biomolecules 16, S. 203 (2026)

Iyer, D. P.; Heidari Khoei, H.; Rivron, N.; Bulut-Karslioglu, A.: Putting mammalian early embryonic cells into dormancy. Nature Protocols (2026)

Drewes, C.; López, C.; Martinez‐Manjón, J. E.; Okeke, N.; Jebaraj, B.; Bens, S.; Brändl, B.; Dyer, M. J. S.; Eichhorst, B.; Fischer, A. et al.; Fischer, K.; Robrecht, S.; Hallek, M.; Glaser, S.; Hillebrecht, S.; Jayne, S.; Kretzmer, H.; Mottok, A.; Müller, F.; Schneider, C.; Ammerpohl, O.; del Val, C.; Stilgenbauer, S.; Tausch, E.; Siebert, R.: Chronic lymphocytic leukemia withIGH::BCL3‐translocation is characterized by a homogeneous and distinct genetic and epigenetic landscape. HemaSphere 10 (2026)

Sashittal, P.; Zhang, R. Y.; Law, B. K.; Schmidt, H.; Strzalkowski, A.; Bolondi, A.; Chan, M. M.; Raphael, B. J.: Inferring cell differentiation maps from lineage tracing data. Nature Methods (2025)

Swanepoel , C. M.; Wang, G.; Zhang, L.; Brändl, B.; Bauer, H.; Tsaytler, P.; Müller, F.-J.; Herrmann, B. G.; Mueller, J. L.: Acquisition of ampliconic sequences marks a selfish mouse t-haplotype. Nature Communications 17, 21 (2025)

Kraushar, M. L.: The on-site, on-demand, neuronal gene machine. Nature Reviews Neuroscience (2025)

Lin, Y.-Y.; Breuer, K.; Weichenhan, D.; Lafrenz, P.; Sarnataro, A.; Wilk, A.; Chepeleva, M.; Mücke, O.; Schönung, M.; Petermann, F. et al.; Kensche, P. R.; Weiser, L.; Thommen, .; Giacomelli, G.; Nordstroem, K.; Gonzalez-Avalos, E.; Merkel, A.; Kretzmer, H.; Fischer, J.; Krämer, S.; Iskar, M.; Wolf, S.; Buchhalter, I.; Esteller, M.; Lawerenz, C.; Twardziok, S.; Zapatka, M.; Hovestadt, V.; Schlesner, M.; Schulz, M. H.; Hoffmann, S.; Gerhause, C.; Walter, J.; Hartmann, M.; Lipka, D. B.; Assenov, Y.; Bock, C.; Plass, C.; Toth, R.; Lutsik, P.: Pipeline Olympics: continuable benchmarking of computational workflows for DNA methylation sequencing data against an experimental gold standard. Nucleic Acids Research 53 (2025)

Biswas, A.; Muñoz, O.; Kim, K.; Hoege, C.; Lorton, B. M.; Nikolay, R.; Kraushar, M. L.; Shechter, D.; Guck, J.; Zaburdaev, V. et al.; Reber, S.: Conserved nucleocytoplasmic density homeostasis drives cellular organization across eukaryotes. Nature Communications 16, 7597 (2025)

Guckelberger, P.; Haut, L.; Tornisiello, R.; Kretzmer, H.; Meissner, A.: HELLS is required for maintaining proper DNA modification at human satellite repeats. Genome Biology (26) (2025)

Hetzel, S.; Hodis , E.; Torlai Triglia, E.; Kovacsovics, A.; Steinmann , K.; Gnirke, A.; Cui, M.; McQuaid, D.; Weigert, R.; Pohl, G. et al.; Muzumdar, M. D.; Leyvraz, S.; Keilholz, U.; Yaspo, M.-L.; Regev, A.; Kretzmer, H.; Smith, Z.; Meissner, A.: Direct genetic transformation bypasses tumor-associated DNA methylation alterations. Genome Biology (26) (2025)

Rossi, F.; Magalhães, A. P.; Buschow, R.; Schubert , T.; Glaser, L. V.; Fontana, A.; Mai , J.; Staege, H.; Grimme, A.; Will, H. et al.; Schriener, .; Hnisz, D.; Vingron, M.; Chiariello, A. M.; Kinkley, S.: Differential oligomerization regulates PHF13 chromatin affinity and function. Nucleic Acids Research 53 (12) (2025)

Yagi, M.; Bonilla, G.; Hoetker, M. S.; Tsopoulidis, N.; Horng, J. E.; Haggerty, C.; Meissner, A.; Sadreyev, R. I.; Hock, H.; Hochedlinger, K.: Bivalent chromatin instructs lineage specification during hematopoiesis. Cell (2025)

Zhang, Y.; Stöppelkamp, I.; Fernandez-Pernas, P.; Allram, M.; Charman, M.; Magalhães, A. P.; Piedavent-Salomon, M.; Sommer, G.; Sung, Y.-C.; Meyer, K. et al.; Grams, N.; Halko, E.; Dongre, S.; Meierhofer, D.; Malszycki, M.; Ilik, I. A.; Aktas, T.; Kraushar, M. L.; Vastenhouw, N.; Weitzman, M. D.; Grebien, F.; Niskanen, H.; Hnisz, D.: Probing condensate microenvironments with a micropeptide killswitch. Nature (2025)