List of publications
Journal Article (215)
1.
Journal Article
82 (6) (2022)
Modularity Maximization for Graphons. SIAM Journal on Applied Mathematics 2.
Journal Article
9 (11), 221131 (2022)
Quantifying the 'end of history' through a Bayesian Markov-chain approach. Royal Society Open Science 3.
Journal Article
13, 6470 (2022)
Integration of Hi-C with short and long-read genome sequencing reveals the structure of germline rearranged genomes. Nature Communications 4.
Journal Article
Co-option of the transcription factor SALL1 in mole ovotestis formation. bioRxiv, 514220 (2022)
5.
Journal Article
185 (20), e21, pp. 3689 - 3704 (2022)
Repression and 3D-restructuring resolves regulatory conflicts in evolutionarily rearranged genomes. Cell 6.
Journal Article
32, 073108 (2022)
Topological data analysis of truncated contagion maps. Chaos 7.
Journal Article
24, pp. 981 - 995 (2022)
Enhanced cortical neural stem cell identity through short SMAD and WNT inhibition in human cerebral organoids facilitates emergence of outer radial glial cells. Nature Cell Biology 8.
Journal Article
38 (10), pp. 2683 - 2691 (2022)
Deep learning identifies and quantifies recombination hotspot determinants. Bioinformatics 9.
Journal Article
434 (11), 167525 (2022)
Visualizing Cluster-specific Genes from Single-cell Transcriptomics Data Using Association Plots. Journal of Molecular Biology 10.
Journal Article
23, 67 (2022)
TADA – a Machine Learning Tool for Functional Annotation based Prioritisation of Putative Pathogenic CNVs. Genome Biology 11.
Journal Article
3, 100414 (2022)
Effect of imputation on gene network reconstruction from single-cell RNA-seq data. Patterns 12.
Journal Article
49 (21), gkab1100, pp. 12178 - 12195 (2021)
Assessing genome-wide dynamic changes in enhancer activity during early mESC differentiation by FAIRE-STARR-seq. Nucleic Acids Research (London) 13.
Journal Article
40, e105862 (2021)
RIF1 and KAP1 differentially regulate the choice of inactive versus active X chromosomes. The EMBO Journal 14.
Journal Article
3 (4), lqab095 (2021)
Quantifying the tissue-specific regulatory information within enhancer DNA sequences. NAR: genomics and bioinformatics 15.
Journal Article
108 (9), pp. 1725 - 1734 (2021)
Position effects at the FGF8 locus are associated with femoral hypoplasia. The American Journal of Human Genetics 16.
Journal Article
220 (10), e202103003 (2021)
Anisotropic expansion of hepatocyte lumina enforced by apical bulkheads. The Journal of Cell Biology: JCB 17.
Journal Article
22, 191 (2021)
A trans locus causes a ribosomopathy in hypertrophic hearts that affects mRNA translation in a protein length-dependent fashion. Genome Biology 18.
Journal Article
49 (8), pp. 4402 - 4420 (2021)
Conserved DNA sequence features underlie pervasive RNA polymerase pausing. Nucleic Acids Research (London) 19.
Journal Article
2021, pp. 1 - 10 (2021)
Computing Leapfrog Regularization Paths with Applications to Large-Scale K-mer Logistic Regression. Journal of Computational Biology 20.
Journal Article
Non-coding deletions identify Maenli lncRNA as a limb-specific En1 regulator. Nature (2021)