List of publications

Chung, H.-R.; Dunkel, I.; Heise, F.; Linke, C.; Krobitsch, S.; Ehrenhofer-Murray, A. E.; Sperling, S. R.; Vingron, M.: The effect of MNase on nucleosome positioning data. PLoS ONE 5 (12), p. e15754 - e15754 (2010)

Behrens, S.; Vingron, M.: Studying the evolution of promoter sequences: a waiting time problem. Journal Computational Biology 17 (12), pp. 1591 - 1606 (2010)

Warnatz, H. J.; Querfurth, R.; Guerasimova, A.; Cheng, X.; Haas, S. A.; Hufton, A. L.; Manke, T.; Vanhecke, D.; Nietfeld, W.; Vingron, M. et al.; Janitz, M.; Lehrach, H.; Yaspo, M. L.: Functional analysis and identification of cis-regulatory elements of human chromosome 21 gene promoters. Nucleic Acids Research 38 (18), pp. 6112 - 6123 (2010)

Heinig, M.; Petretto, E.; Wallace, C.; Bottolo, L.; Rotival, M.; Lu, H.; Li, Y.; Sarwar, R.; Langley, S. R.; Bauerfeind, A. et al.; Hummel, O.; Lee, Y. A.; Paskas, S.; Rintisch, C.; Saar, K.; Cooper, J.; Buchan, R.; Gray, E. E.; Cyster, J. G.; Erdmann, J.; Hengstenberg, C.; Maouche, S.; Ouwehand, W. H.; Rice, C. M.; Samani, N. J.; Schunkert, H.; Goodall, A. H.; Schulz, H.; Roider, H. G.; Vingron, M.; Blankenberg, S.; Munzel, T.; Zeller, T.; Szymczak, S.; Ziegler, A.; Tiret, L.; Smyth, D. J.; Pravenec, M.; Aitman, T. J.; Cambien, F.; Clayton, D.; Todd, J. A.; Hubner, N.; Cook, S. A.: A trans-acting locus regulates an anti-viral expression network and type 1 diabetes risk. Nature 467 (7314), pp. 460 - 464 (2010)

Szczurek, E.; Biecek, P.; Tiuryn, J.; Vingron, M.: Introducing knowledge into differential expression analysis. Journal of Computational Biology 17 (8), pp. 953 - 967 (2010)

Kielbasa, S. M.; Klein, H.; Roider, H. G.; Vingron, M.; Blüthgen, N.: TransFind--predicting transcriptional regulators for gene sets. Nucleic Acids Research 38 Suppl, pp. W275 - W280 (2010)

Richard, H.; Schulz, M. H.; Sultan, M.; Nurnberger, A.; Schrinner, S.; Balzereit, D.; Dagand, E.; Rasche, A.; Lehrach, H.; Vingron, M. et al.; Haas, S. A.; Yaspo, M. L.: Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments. Nucleic Acids Research 38 (10), p. e112 - e112 (2010)

Manke, T.; Heinig, M.; Vingron, M.: Quantifying the effect of sequence variation on regulatory interactions. Hum Mutation 31 (4), pp. 477 - 483 (2010)

Schütze, T.; Arndt, P. F.; Menger, M.; Wochner, A.; Vingron, M.; Erdmann, V. A.; Lehrach, H.; Kaps, C.; Glökler, J.: A calibrated diversity assay for nucleic acid libraries using DiStRO-a Diversity Standard of Random Oligonucleotides. Nucleic Acids Research 38 (4), p. e23 - e23 (2010)

Karlic, R.; Chung, H. R.; Lasserre, J.; Vlahovicek, K.; Vingron, M.: Histone modification levels are predictive for gene expression. Proceedings of the National Academy of Sciences USA 107 (7), pp. 2926 - 2931 (2010)

Meng, G.; Mosig, A.; Vingron, M.: A computational evaluation of over-representation of regulatory motifs in the promoter regions of differentially expressed genes. BMC Bioinformatics 11, p. 11:267 - 11:267 (2010)