Zeitschriftenartikel (15)

  1. 1.
    Zeitschriftenartikel
    Hufton, A. L.; Mathia, S.; Braun, H.; Georgi, U.; Lehrach, H.; Vingron, M.; Poustka, A. J.; Panopoulou, G.: Deeply conserved chordate noncoding sequences preserve genome synteny but do not drive gene duplicate retention. Genome Resaerch 19, S. 2036 - 2051 (2009)
  2. 2.
    Zeitschriftenartikel
    Roider, H. G.; Lenhard, B.; Kanhere, A.; Haas, S. A.; Vingron, M.: CpG-depleted promoters harbor tissue-specific transcription factor binding signals—implications for motif overrepresentation analyses. Nucleic Acids Research 37 (19), S. 6305 - 6315 (2009)
  3. 3.
    Zeitschriftenartikel
    Chavez, L.; Bais, A. S.; Vingron, M.; Lehrach, H.; Adjaye, J.; Herwig, R.: In silico identification of a core regulatory network of OCT4 in human embryonic stem cells using an integrated approach. BMC Genomics 10, S. 314 - 314 (2009)
  4. 4.
    Zeitschriftenartikel
    Huang, X.; Vingron, M.: Maximum Similarity: A New Formulation of Phylogenetic Reconstruction. Journal of Computational Biology 16 (7), S. 887 - 896 (2009)
  5. 5.
    Zeitschriftenartikel
    Szczurek, E.; Gat-Viks, I.; Tiuryn, J.; Vingron, M.: Elucidating regulatory mechanisms downstream of a signaling pathway using informative experiments. Molecular Systems Biology 5, 2009.45 (2009)
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    Zeitschriftenartikel
    Chung, H.-R.; Vingron, M.: Comparison of sequence-dependent tiling array normalization approaches. BMC Bioinformatics 10, S. 204 - 204 (2009)
  7. 7.
    Zeitschriftenartikel
    Roider, H. G.; Manke, T.; O'Keeffe, S.; Vingron, M.; Haas, S. A.: PASTAA: identifying transcription factors associated with sets of co-regulated genes. Bioinformatics 25 (4), S. 435 - 442 (2009)
  8. 8.
    Zeitschriftenartikel
    Steinhoff,, C.; Paulsen, M.; Kielbasa, S.; Walter, J.; Vingron, M.: Expression profile and transcription factor binding site exploration of imprinted genes in human and mouse. BMC Genomics 10, S. e144 - e144 (2009)
  9. 9.
    Zeitschriftenartikel
    Chung, H.-R.; Vingron, M.: Sequence-dependent Nucleosome Positioning. Journal of Molecular Biology 386 (5), S. 1411 - 1422 (2009)
  10. 10.
    Zeitschriftenartikel
    Pape, U. J.; Klein, H.; Vingron, M.: Statistical detection of cooperative transcription factors with similarity adjustment. Bioinformatics 25 (16), S. 2103 - 2109 (2009)
  11. 11.
    Zeitschriftenartikel
    Stritt, C.; Stern, S.; Harting, K.; Manke, T.; Sinske, D.; Schwarz, H.; Vingron, M.; Nordheim, A.; Knöll, B.: Paracrine control of oligodendrocyte differentiation by SRF-directed neuronal gene expression. Nature Neuroscience 12 (4), S. 418 - 427 (2009)
  12. 12.
    Zeitschriftenartikel
    Gat-Viks, I.; Vingron, M.: Evidence for Gene-Specific Rather Than Transcription Rate–Dependent Histone H3 Exchange in Yeast Coding Regions. PLoS Computational Biology 5 (2), S. e1000282 - e1000282 (2009)
  13. 13.
    Zeitschriftenartikel
    Zemojtel, T.; Kielbasa, S. M.; Arndt, P. F.; Chung, H.-R.; Vingron, M.: Methylation and deamination of CpGs generate p53-binding sites on a genomic scale. Trends in Genetics 25 (2), S. 63 - 66 (2009)
  14. 14.
    Zeitschriftenartikel
    Vingron, M.; Brazma, A.; Coulson, R.; van Helden, J.; Manke, T.; Palin, K.; Sand, O.; Ukkonen, E.: Integrating sequence, evolution and functional genomics in regulatory genomics. Genome Biology 10 (1), S. 202 - 202 (2009)
  15. 15.
    Zeitschriftenartikel
    Kanhere, A.; Vingron, M.: Horizontal Gene Transfers in prokaryotes show differential preferences for metabolic and translational genes. BMC Evolutionary Biology 9 (9), 1471-2148-9-9 (2009)

Buchkapitel (1)

  1. 16.
    Buchkapitel
    Schulz, M. H.; Köhler, S.; Bauer, S.; Vingron, M.; Robinson, P. N.: Exact Score Distribution Computation for Similarity Searches in Ontologies. In: Algorithms in Bioinformatics, S. 298 - 309 (Hg. Salzberg, S. L.; Warnow, T.). Springer, New York [et al] (2009)
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