Meinel, T.; Krause, A.; Luz, H.; Vingron, M.; Staub, E.: The SYSTERS Protein Family Database in 2005.

Schmid, M.; Davison, T. S.; Henz, S. R.; Pape, U. J.; Demar, M.; Vingron, M.; Schoelkopf, B.; Weigel, D.; Lohmann, J. U.: A gene expression map of Arabidopsis development.

Schulz, M. H.; Köhler, S.; Bauer, S.; Vingron, M.; Robinson, P. N.: Exact Score Distribution Computation for Similarity Searches in Ontologies. In: Algorithms in Bioinformatics, S. 298 - 309 (Hg. Salzberg, S. L.; Warnow, T.). Springer, New York [et al] (2009)

Schulz, M. H.; Weese, D.; Rausch, T.; Döring, A.; Reinert, K.; Vingron, M.: Fast and adaptive variable order Markov chain construction. In: Algorithms in Bioinformatics, S. 306 - 317 (Hg. Crandall, K. A.; Lagergren, J.). Springer, Berlin / Heidelberg (2008)

Coulson, R.; Manke, T.; Palin, K.; Roider, H.; Sand, O.; van Helden, J.; Ukkonen, E.; Vingron, M.; Brazma, A.: From gene expression profiling to gene regulation. In: Modern Genome Annotation, S. 91 - 102 (Hg. Frishman, D.; Valencia, A.). Springer, Wien (2008)

Manke, T.; Roider, H. G.; Vingron, M.: A biophysical approach to large-scale protein-DNA binding data. In: Modern Genome Annotation: The Biosapiens Network, S. 91 - 102 (Hg. Frishman, D.; Valencia, A.). Springer, New York (2008)

Klau, G. W.; Rahmann, S.; Schliep, A.; Vingron, M.; Reinert, K.: Integer linear programming approaches for non-unique probe selection. In: Discrete Mathematics and Data Mining II - DM & DM II, S. 840 - 856 (Hg. Anthony, M.H.G.; Boros, E.; Hammer, P.L.; Kogan, A.). Elsevier, Amsterdam et al (2007)

Behzadi, B.; Vingron, M.: Reconstructing Domain Compositions of Ancestral Multi-Domain Proteins. In: Comparative Genomics, S. 1 - 10. Springer, Berlin/Heidelberg (2006)

Behzadi, B.; Vingron, M.: An Improved Algorithm for the Macro-evolutionary Phylogeny Problem. In: Combinatorial Pattern Matching, S. 177 - 187. Springer, Berlin/Heidelberg (2006)

Steinhoff, C.; Vingron, M.: Normalization strategies for microarray data analysis. In: DNA Microarrays, S. 215 - 223 (Hg. Nuber, U.). Garland Science, Great Britain (2005)

Huber, W.; Heydebreck, A. v.; Vingron, M.: Analysis of microarray gene expression data. In: Handbook of Statistical Genetics, S. / - / (Hg. Balding, D. J.; Bishop, M.; Cannings, C.). John Wiley & Sons, Ltd, Chichester [et al] (2003)

Fellenberg, K.; Vingron, M.; Hauser, N. C.; Hoheisel, J. D.: Correspondence analysis with microarray data. In: Perspectives in gene expression, S. 307 - 343 (Hg. Appasani, K.). Eaton Publishing, Westborough, MA (2003)

Brazma, A.; Sarkans, U.; Robinson, A.; Jaak, V.; Vingron, M.; Hoheisel, J.; Fellenberg, K.: Microarray Data Representation, Annotation and Storage. In: Chip Technology, S. 113 - 139 (Hg. Hoheisel, J.). Springer-Verlag, Heidelberg (2002)

Gaussian mixture density estimation applied to microarray data (Lecture Notes in Computer Sciences, 2810). 5th International Symposium on Intelligent Data Analysis, IDA 2003, Berlin, Germany, 28. August 2003 - 30. August 2003. Springer, Berlin [et al] (2003), 624 pp S.

Schöpflin, R.; Andrey, G.; Heinrich, V.; Franke, M.; Ibrahim, D.; Paliou, C.; Mundlos, S.; Vingron, M.: Identification of potential regulatory elements in Capture-C interaction profiles. In: Genome Regulation in 3D, Bd. 2015. Genome Regulation in 3D, Rehovot, Israel, 28. Juni 2015 - 30. Juni 2015. Weizmann Institute, Rehovot, Israel (2015)

Schöpflin, R.; Vingron, M.: Identification of cis-regulatory elements from chromosome conformation capture data. In: 19th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2015). 19th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2015), Warsaw, Poland, 12. April 2015 - 15. April 2015. (2015)

Pape, U. J.; Vingron, M.: Statistics for Co-Occurrence of DNA Motifs. 2008 International Workshop on Applied Probability, Université de Technologie de Compiègne, France, 07. Juli 2008 - 10. Juli 2008. (2008)

Pape, U.; Vingron, M.: Statistical detection of co-operative transcription factors with similarity adjustment. In: Proceedings of the German Conference on Bioinformatics, GCB, S. 96 - 105 (Hg. Andreas Beyer, M. S.). German Conference on Bioinformatics (GCB), Dresden, 09. September 2008 - 12. September 2008. GI (2008)

Klein, H.; Vingron, M.: Using Transcription Factor Binding Site Co-Occurrence to Predict Regulatory Regions. The Seventh Annual International Workshop on Bioinformatics and Systems Biology, Institute of Medical Science, The University of Tokyo, Japan, 31. Juli 2007 - 02. August 2007. Genome Informatics 18, S. 109 - 118 (2007)

Luz, H.; Staub, E.; Vingron, M.: About the interrelation of evolutionary rate and protein age. Sixth International Workshop on Bioinformatics and Systems Biology, Boston University, USA, 24. Juli 2006 - 26. Juli 2006. Genome Informatics: Japanese Society for Bioinformatics 17 (1), S. 240 - 250 (2006)