The following publications were published exclusively under the affiliation of the Max Planck Society. For publications by the principal investigator outside of the Max Planck Society, see the links on the lower left.

Journal Article (140)

Journal Article
Zhang, Y.; Rohde, C.; Tierlin, S.; Jurkowski, T. P.; Bock, C.; Santacruz, D.; Ragozin, S.; Reinhardt, R.; Groth, M.; Walter, J. et al.; Jeltsch, A.: DNA methylation analysis of chromosome 21 gene promoters at single base pair and single allele resolution. PLoS Genetics 5 (3), p. e1000438 - e1000438 (2009)
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Bíliková, K.; Mirgorodskaya, E.; Bukovská, G.; Gobom, J.; Lehrach, H.; Imúth, J.: The effect of post-translational modifications on the antimicrobial activity of apalbumin2. Proteomics 9 (8), pp. 2131 - 2138 (2009)
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Bozek, K.; Relógio, A.; Kielbasa, S. M.; Heine, M.; Dame, C.; Kramer, A.; Herzel, H.: Regulation of Clock-Controlled Genes in Mammals. PLoS ONE 4 (3), p. e4882 - e4882 (2009)
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Barrionuevo, F.; Georg, I.; Scherthan, H.; Lécureuil, C.; Guillou, F.; Wegner, M.; Scherer, G.: Testis cord differentiation after the sex determination stage is independent of Sox9 but fails in the combined absence of Sox9 and Sox8. Developmental Biology 327 (2), pp. 301 - 312 (2009)
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Chung, H.-R.; Vingron, M.: Sequence-dependent Nucleosome Positioning. Journal of Molecular Biology 386 (5), pp. 1411 - 1422 (2009)
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Denekamp, N. Y. ..; Thorne, M. A.S.; Clark, M. S.; Kube, M.; Reinhardt, R.; Lubzens, E.: Discovering genes associated with dormancy in the monogonont rotifer Brachionus plicatilis. BMC Genomics 13 (10), p. 108 - 108 (2009)
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Palidwor, G. A.; Shcherbinin, S.; Huska, M. R.; Rasko, T.; Stelzl, U.; Arumughan, A.; Foulle, R.; Porras, P.; Sanchez-Pulido, L.; Wanker, E. E. et al.; Andrade-Navarro, M. A.: Detection of alpha-rod protein repeats using a neural network and application to Huntingtin. PLoS Computational Biology 5 (3), p. e1000304 - e1000304 (2009)
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Walser, M.; Pellaux, R.; Meyer, A.; Bechtold, M.; Vanderschuren, H.; Reinhardt, R.; Magyar, J.; Panke, S.; Held, M.: Novel method for high-throughput colony PCR screening in nanoliter-reactors. Nucleic Acids Research 37 (8), p. e57 - e57 (2009)
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Hache, H.; Lehrach, H.; Herwig, R.: Reverse Engineering of Gene Regulatory Networks: A Comparative Study. EURASIP Journal on Bioinformatics and Systems Biology 2009, ID 617281 (2009)
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Pape, U. J.; Klein, H.; Vingron, M.: Statistical detection of cooperative transcription factors with similarity adjustment. Bioinformatics 25 (16), pp. 2103 - 2109 (2009)
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Birtwistle, J.; Hayden, R. E.; Khanim, F. L.; Green, R. M.; Pearce, C.; Davies, N. J.; Wake, N.; Schrewe, H.; Ride, J. P.; Chipman, J. K. et al.; Bunce, C. M.: The aldo-keto reductase AKR1C3 contributes to 7,12-dimethylbenz(a)anthracene-3,4-dihydrodiol mediated oxidative DNA damage in myeloid cells: Implications for leukemogenesis. Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 662 (1-2), pp. 67 - 74 (2009)
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Stritt, C.; Stern, S.; Harting, K.; Manke, T.; Sinske, D.; Schwarz, H.; Vingron, M.; Nordheim, A.; Knöll, B.: Paracrine control of oligodendrocyte differentiation by SRF-directed neuronal gene expression. Nature Neuroscience 12 (4), pp. 418 - 427 (2009)
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Nebrich, G.; Herrmann, M.; Hartl, D.; Diedrich, M.; Kreitler, T.; Wierling, C.; Klose, J.; Giavalisco, P.; Zabel, C.; Mao, L.: PROTEOMER: A workflow-optimized laboratory information management system for 2-D electrophoresis-centered proteomics. Proteomics 9 (7), pp. 1795 - 1808 (2009)
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Hache, H.; Wierling, C.; Lehrach, H.; Herwig, R.: GeNGe: systematic generation of gene regulatory networks. Bioinformatics. Bioinformatics 25 (9), pp. 1205 - 1207 (2009)
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Laumonnier, F.; Shoubridge, C.; Antar, C.; Nguyen, L. S.; Van Esch, H.; Kleefstra, T.; Briault, S.; Fryns, J. P.; Hamel, B.; Chelly, J. et al.; Ropers, H.-H.; Ronce, N.; Blesson, S.; Moraine, C.; Gécz, J.; Raynaud, M.: Mutations of the UPF3B gene, which encodes a protein widely expressed in neurons, are associated with nonspecific mental retardation with or without autism. Molecular Psychiatry 2009, pp. 1 - 10 (2009)
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Jan-Christian Schuette, J.-C.; Murphy, F. V.; Kelley, A. C.; Weir, J. R.; Giesebrecht, J.; Connell, S. R.; Loerke, J.; Mielke, T.; Zhang, W.; Penczek, P. A. et al.; Ramakrishnan, V.; Spahn, C. M. T.: GTPase activation of elongation factor EF-Tu by the ribosome during decoding. The EMBO Journal 28 (6), pp. 755 - 765 (2009)
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Jung, M.; Mollenkopf, H.-J.; Grimm, C.; Wagner, I.; Albrecht, M.; Waller, T.; Pilarsky, C.; Johannsen, M.; Stephan, C.; Lehrach, H. et al.; Nietfeld, W.; Rudel, T.; Jung, K.; Kristiansen, G.: MicroRNA profiling of clear cell renal cell cancer identifies a robust signature to define renal malignancy. Journal of Cellular and Molecular Medicine 13 (9b), pp. 3918 - 3928 (2009)
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Jogler, C.; Kube, M.; Schübbe, S.; Ullrich, S.; Teeling, H.; Bazylinski, D. A.; Reinhardt, R.; Schüler, D.: Comparative analysis of magnetosome gene clusters in magnetotactic bacteria provides further evidence for horizontal gene transfer. Environmental Microbiology 11 (5), pp. 1267 - 1277 (2009)
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Gat-Viks, I.; Vingron, M.: Evidence for Gene-Specific Rather Than Transcription Rate–Dependent Histone H3 Exchange in Yeast Coding Regions. PLoS Computational Biology 5 (2), p. e1000282 - e1000282 (2009)
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König, B.; Müller, J. J.; Lanka, E.; Heinemann, U.: Crystal structure of KorA bound to operator DNA: insight into repressor cooperation in RP4 gene regulation. Nucleic Acids Research 37 (6), pp. 1915 - 1924 (2009)
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