Publications

Journal Article

Sheinman, M.; Arndt, P. F.; Massip, F.: Modeling the mosaic structure of bacterial genomes to infer their evolutionary history. PNAS 121 (13), Article e2313367121 (2024)

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Raaz, L.; Mendez, P.-L.; Mundlos, S.; Knaus, P.; Jatzlau, J.: Protocol for chromatin accessibility profiling of human endothelial cells cultured under fluid shear stress using ATAC-seq. STAR Protocols 5 (1), Article 102859 (2024)

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Hauswedell , H.; Hetzel, S.; Gottlieb , S. G.; Kretzmer, H.; Meissner, A.; Reinert, K.: Lambda3: homology search for protein, nucleotide, and bisulfite-converted sequences. Bioinformatics 40 (3), Article btae097 (2024)

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Kanczok, J.; Jauch-Chara, K.; Müller, F.-J.: Imagery rescripting and cognitive restructuring for inpatients with moderate and severe depression - a controlled pilot study. BMC Psychiatry 24 (1), Article 194 (2024)

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Rüegg, A. B.; van der Weijden, V. A.; de Sousa, J. A.; von Meyenn, F.; Pausch, H.; Ulbrich, S. E.: Developmental progression continues during embryonic diapause in the roe deer. Communications Biology 7 (1), 270 (2024)

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Lo, B.-W.; Martinez Real, F.; Magg, A.; Wise, J.; Mundlos, S.; Franchini, P.: Genome-wide demographic analyses of balaenid whales revealed complex history of gene flow associated with past climate oscillation. bioRxiv (2024)

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Nakanoh, S.; Sham, K.; Ghimire, S.; Mohorianu, I.; Rayon, T.; Vallier, L.: Human surface ectoderm and amniotic ectoderm are sequentially specified according to cellular density. Science Advances 10 (9), Article eadh7748 (2024)

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Radke, J.; Meinhardt, J.; Aschman, T. e. a.; Timmermann, B.; Fernandez-Zapata, C.; Böttcher, C.; Stenzel, W.; Krüger, E.; Landthaler, M.; Wyler, E. et al.; Corman, V.; Stadelmann, C.; Ralser, M.; Eils, R.; Heppner, F. L.; Mülleder, M.; Conrad, C.; Radbruch, H.: Proteomic and transcriptomic profiling of brainstem, cerebellum and olfactory tissues in early- and late-phase COVID-19. Nature Neuroscience 27 (3), pp. 409 - 420 (2024)

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White, M. E. H.; Sinn, L. R.; Jones, D. M. e. a.; Ralser, M.: Oxonium ion scanning mass spectrometry for large-scale plasma glycoproteomics. Nature Biomedical Engineering 8 (3), pp. 233 - 247 (2024)

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Ilik, I. A.; Glažar, P.; Tse, K.; Brändl, B.; Meierhofer, D.; Müller, F.-J.; Smith, Z. D.; Aktas, T.: Autonomous transposons tune their sequences to ensure somatic suppression. Nature 626 (8001), pp. 1116 - 1124 (2024)

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Qiu, C.; Martin, B. K.; Welsh, I. C. e. a.; Spielmann, M.; Murray, S. A.; Trapnell, C.; Shendure, J.: A single-cell time-lapse of mouse prenatal development from gastrula to birth. Nature 626 (8001), pp. 1084 - 1093 (2024)

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Flügel, T.; Schacherl, M.; Unbehaun, A.; Schroeer, B.; Dabrowski, M.; Bürger, J.; Mielke, T.; Sprink, T.; Diebolder, C. A.; Guillén Schlippe , Y. V. et al.; Spahn , C. M. T.: Transient disome complex formation in native polysomes during ongoing protein synthesis captured by cryo-EM. Nature Communications 15 (1), Article 1756 (2024)

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Mishra, H.; Schlack-Leigers, C.; Lim, E. L.; Thieck, O.; Magg, T.; Raedler, J.; Wolf, C.; Klein, C.; Ewers, H.; Lee-Kirsch, M. A. et al.; Meierhofer, D.; Hauck, F.; Majer, O.: Disrupted degradative sorting of TLR7 is associated with human lupus. Science Immunology 9 (92), Article eadi9575 (2024)

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Schnitzler, G. R.; Kang, H.; Fang, S.; Angom, R. S.; Lee-Kim, V. S.; Ma, X. R.; Zhou, R.; Zeng, T.; Guo, K.; Taylor, M. S. et al.; Vellarikkal, S. K.; Barry, A. E.; Sias-Garcia, O.; Bloemendal, A.; Munson, G.; Guckelberger, P.; Nguyen, T. H.; Bergman, D. T.; Hinshaw, S.; Cheng, N.; Cleary, B.; Aragam, K.; Lander, E. S.; Finucane, H. K.; Mukhopadhyay, D.; Gupta, R. M.; Engreitz, J. M.: Convergence of coronary artery disease genes onto endothelial cell programs. Nature 626 (8000), pp. 799 - 807 (2024)

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Key, J.; Gispert, S.; Reddy Kandi , A.; Heinz, D.; Hamann, A.; Osiewacz, H. D.; Meierhofer, D.; Auburger, G.: CLPP-Null Eukaryotes with Excess Heme Biosynthesis Show Reduced L-arginine Levels, Probably via CLPX-Mediated OAT Activation. Biomolecules 14 (2), Article 241 (2024)

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da Silva, R. G. L.; Schweizer, J.; Kamenova, K.; Au, L.; Blasimme, A.; Vayena, E.: Organizational change of synthetic biology research: Emerging initiatives advancing a bottom-up approach. Current Research in Biotechnology 7, Article 100188 (2024)

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Wei , X.; Rigopoulos, A.; Lienhard, M.; Pöhle-Kronawitter, S.; Kotsaris , G.; Franke, J.; Berndt, N.; Mejedo, J. O.; Wu, H.; Börno, S. et al.; Timmermann, B.; Murgai, A.; Glauben, R.; Stricker, S.: Neurofibromin 1 controls metabolic balance and Notch-dependent quiescence of murine juvenile myogenic progenitors. Nature Communications 15 (1), 1393 (2024)

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Grüning, N.-M.; Ralser, M.: Monogenic Disorders of ROS Production and the Primary Anti-Oxidative Defense. Biomolecules 14 (2), Article 206 (2024)

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Yan, M.; Li, M.; Wang, Y.; Wang, X.; Moeinzadeh, H.-M.; Quispe-Huamanquispe, D. G.; Fan, W.; Fang, Y.; Wang, Y.; Nie, H. et al.; Wang, Z.; Tanaka, A.; Heider, B.; Kreuze, J. F.; Gheysen, G.; Wang, H.; Vingron, M.; Bock, R.; Yang, J.: Haplotype-based phylogenetic analysis and population genomics uncover the origin and domestication of sweetpotato. Molecular Plant 17 (2), pp. 277 - 296 (2024)

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Balachandran, S.; Prada-Medina, C. A.; Mensah, M. A. e. a.; Spielmann, M.: STIGMA: Single-cell tissue-specific gene prioritization using machine learning. The American Journal of Human Genetics 111 (2), pp. 338 - 349 (2024)

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Journal Article (112)