The following publications were published exclusively under the affiliation of the Max Planck Society. For publications by the principal investigator outside of the Max Planck Society, see the links on the lower left.

Journal Article (95)

Journal Article
Wilder , A. P.; Dudchenko , O.; Curry , C.; Korody , M.; Turbek , S. P.; Daly, M.; Misuraca , A.; Wang, G.; Khan , R.; Weisz, D. et al.; Fronczek, J.; Lieberman Aiden , E.; Houck , M. L.; Shier , D. M.; Ryder , O. A.; Steiner , C. C.: A Chromosome-Length Reference Genome for the Endangered Pacific Pocket Mouse Reveals Recent Inbreeding in a Historically Large Population. Genome Biology and Evolution 14 (8), evac122 (2022)
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Asimi, V.; Sampath Kumar, A.; Niskanen, H.; Riemenschneider, C.; Hetzel, S.; Naderi, J.; Fasching, N.; Popitsch, N.; Du, M.; Kretzmer, H. et al.; Smith, Z. D.; Weigert, R.; Walther, M.; Mamde, S.; Meierhofer, D.; Wittler, L.; Buschow, R.; Timmermann, B.; Cisse, I. I.; Ameres, S. L.; Meissner, A.; Hnisz, D.: Hijacking of transcriptional condensates by endogenous retroviruses. Nature Genetics 54 (8), pp. 1238 - 1247 (2022)
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Hudert, C. A.; Adams, L. A.; Alisi, A.; Anstee, Q. M.; Crudele, A.; Draijer, L. G.; EU-PNAFLD, I.; Furse, S.; Hengstler, J. G.; Jenkins, B. et al.; Karnebeek, K.; Kelly, D. A.; Koot, B. G.; Koulman, A.; Meierhofer, D.; Melton, P. E.; Mori, T. A.; Snowden, S. G.; van Mourik, I.; Vreugdenhil, A.; Wiegand, S.; Mann, J. P.: Variants in mitochondrial amidoxime reducing component 1 and hydroxysteroid 17- beta dehydrogenase 13 reduce severity of nonalcoholic fatty liver disease in children and suppress fibrotic pathways through distinct mechanisms. Hepatology Communications 6 (8), pp. 1934 - 1948 (2022)
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Yuan, W.; Ma, S.; Brown, J. R.; Kim, K.; Murek, V.; Trastulla, L.; Meissner, A.; Lodato, S.; Shetty, A. S.; Levin, J. Z. et al.; Buenrostro, J. D.; Ziller, M. J.; Arlotta, P.: Temporally divergent regulatory mechanisms govern neuronal diversification and maturation in the mouse and marmoset neocortex. Nature Neuroscience 25 (8), pp. 1049 - 1058 (2022)
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Pevzner, P.; Vingron, M.; Reidys, C.; Sun, F.; Istrail, S.: Michael Waterman's Contributions to Computational Biology and Bioinformatics. Journal of Computational Biology 29 (7), pp. 601 - 615 (2022)
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Louvet, L.; Lenglet, G.; Krautzberger, A. M.; Mentaverri, R.; Hague, F.; Kowalewski, C.; Mahtal, N.; Lesieur, J.; Bonnet, A.-L.; Andrique, C. et al.; Gaucher, C.; Gomila, C.; Schrewe, H.; Tharaux, P.-L.; Kamel, S.; Chaussain, C.; Six, I.: Vasorin plays a critical role in vascular smooth muscle cells and arterial functions. Journal of Cellular Physiology 237 (10), pp. 3845 - 3859 (2022)
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Los, B.; Preußner, M.; Eschke, K.; Vidal, R. M.; Abdelgawad, A.; Olofsson, D.; Keiper, S.; Paulo-Pedro, M.; Grindel, A.; Meinke, S. et al.; Trimpert, J.; Heyd, F.: Body temperature variation controls pre-mRNA processing and transcription of antiviral genes and SARS-CoV-2 replication. Nucleic Acids Research 50 (12), pp. 6769 - 6785 (2022)
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Klimm, F.: Topological data analysis of truncated contagion maps. Chaos 32 (7), Article 073108 (2022)
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Baranasic, D.; Hörtenhuber, M.; Balwierz, P.; Zehnder, T.; Mukarram, A. K.; Nepal, C.; Varnai, C.; Hadzhiev, Y.; Jimenez- Gonzalez, A.; Li, N. et al.; Wragg, J.; D’Orazio, F.; Díaz, N.; Hernández- Rodríguez, B.; Chen, Z.; Stoiber, M.; Dong, M.; Stevens, I.; Ross, S. E.; Eagle, A.; Martin, R.; Obasaju, P.; Rastegar, S.; McGarvey, A. C.; Kopp, W.; Chambers, E.; Wang, D.; Kim, H. R.; Acemel, R. D.; Naranjo, S.; Lapinski, M.; Chong, V.; Mathavan, S.; Peers, B.; Sauka-Spengler, T.; Vingron, M.; Carninci, P.; Ohler, U.; Lacadie, S. A.; Burgess, S.; Winata, C.; van Eeden, F.; Vaquerizas, J. M.; Gómez-Skarmeta, J. L.; Onichtchouk, D.; Brown, B. J.; Bogdanovic, O.; Westerfield, M.; Wardle, F. C.; Daub, C. O.; Lenhard, B.; Müller, F.: Multiomic atlas with functional stratification and developmental dynamics of zebrafish cis-regulatory elements. Nature Genetics 54 (7), pp. 1037 - 1050 (2022)
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Leyvraz, S.; Konietschke, F.; Peuker, C.; Schütte, M.; Kessler, T.; Ochsenreither, S.; Ditzhaus, M.; Sprünken, E. D.; Dörpholz, G.; Lamping, M. et al.; Rieke, D. T.; Klinghammer, K.; Burock, S.; Ulrich, C.; Poch, G.; Schäfer, R.; Klauschen, F.; Joussen, A.; Yaspo, M.-L.; Keilholz, U.: Biomarker-driven therapies for metastatic uveal melanoma: A prospective precision oncology feasibility study. European Journal of Cancer 169, pp. 146 - 155 (2022)
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Mattei, A. L.; Bailly, N.; Meissner, A.: DNA methylation: a historical perspective. Trends in Genetics 38 (7), pp. 676 - 707 (2022)
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Heck, R.; Fischer-Zirnsak, B.; Photiadis, J.; Horn, D.; Gehle, P.: Different ascending aortic phenotypes with similar mutations in two patients with Loeys-Dietz-Syndrome type 2. Interactive CardioVascular and Thoracic Surgery 35 (1), ivac159 (2022)
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Rosebrock, D.; Arora, S.; Mutukula, N.; Volkman, R.; Gralinska, E.; Balaskas, A.; Aragonés Hernández, A.; Buschow, R.; Brändl, B.; Müller, F.-J. et al.; Arndt, P. F.; Vingron, M.; Elkabetz, Y.: Enhanced cortical neural stem cell identity through short SMAD and WNT inhibition in human cerebral organoids facilitates emergence of outer radial glial cells. Nature Cell Biology 24 (6), pp. 981 - 995 (2022)
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Oheim, R.; Tsourdi , E.; Seefried , L.; Beller , G.; Schubach , M.; Vettorazzi , E.; Stürznickel, J.; Rolvien , T.; Ehmke , N.; Delsmann , A. et al.; Genest, F.; Krüger, U.; Zemojtel , T.; Barvencik , F.; Schinke , T.; Jakob, F.; Hofbauer, L. C.; Mundlos, S.; Kornak, U.: Genetic Diagnostics in Routine Osteological Assessment of Adult Low Bone Mass Disorders. Journal of Clinical Endocrinology and Metabolism 107 (7), pp. e3048 - e3057 (2022)
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Thedinga, K.; Herwig, R.: Gradient tree boosting and network propagation for the identification of pan-cancer survival networks. STAR Protocols 3 (2), 101353 (2022)
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Hilal, T.; Killam, B. Y.; Grozdanović, M.; Dobosz-Bartoszek, M.; Loerke, J.; Bürger, J.; Mielke, T.; Copeland, P. R.; Simonović, M.; Spahn, C. M. T.: Structure of the mammalian ribosome as it decodes the selenocysteine UGA codon. Science 376, pp. 1338 - 1343 (2022)
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Berlak, M.; Tucker, E.; Dorel, M.; Winkler, A.; McGearey, A.; Rodriguez-Fos, E.; Martins da Costa, B.; Barker, K.; Fyle, E.; Calton, E. et al.; Eising, S.; Ober, K.; Hughes, D.; Koutroumanidou, E.; Carter, P.; Stankunaite, R.; Proszek, P.; Jain, N.; Rosswog, C.; Dorado-Garcia, H.; Molenaar, J. J.; Hubank, M.; Barone, G.; Anderson, J.; Lang, P.; Deubzer, H. E.; Künkele, A.; Fischer, M.; Eggert, A.; Kloft, C.; Henssen, A. G.; Boettcher, M.; Hertwig, F.; Blüthgen, N.; Chesler, L.; Schulte, J. H.: Mutations in ALK signaling pathways conferring resistance to ALK inhibitor treatment lead to collateral vulnerabilities in neuroblastoma cells. Molecular Cancer 21, 126 (2022)
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Amaral, A.: Energy metabolism in mammalian sperm motility. Wiley interdisciplinary reviews: WIREs Mechanisms of Disease 14 (5), e1569 (2022)
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Peng, S.; Dahlgren, A. R.; Hales , E. N.; Barber, A. M.; Kalbfleisch, T.; Petersen, J. L.; Bellone, R. R.; Mackowski, M.; Cappelli, K.; Capomaccio, S. et al.; Coleman, S. J.; Distl, O.; Giulotto, E.; Waud, B.; Hamilton , N. A.; Leeb, T.; Lindgren , G.; Lyons, L. A.; McCue, M.; MacLeod, J. N.; Metzger, J.; Mickelson, J. R.; Murphy, B. A.; Orlando, L.; Penedo, C.; Raudsepp, T.; Strand, E.; Tozaki , T.; Trachsel, D. S.; Velie, B. D.; Wade, C. M.; Cieslak, J.; Finno, J. C.: Long-read RNA Sequencing Improves the Annotation of the Equine Transcriptome. bioRxiv, 495038 (2022)
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Hetzel, S.; Mattei, A. L.; Kretzmer, H.; Qu, C.; Chen, X.; Fan, Y.; Wu, G.; Roberts, K. G.; Luger, S.; Litzow, M. et al.; Rowe, J.; Paietta, E.; Stock, W.; Mardis, E. R.; Wilson, R. K.; Downing, J. R.; Mullighan, C. G.; Meissner, A.: Acute lymphoblastic leukemia displays a distinct highly methylated genome. Nature Cancer 3 (6), pp. 768 - 782 (2022)
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