Publications

Journal Article

Piro, V. C.; Dadi, T. H.; Seiler, E.; Reinert, K.; Renard, B. Y.: ganon: precise metagenomics classification against large and up-to-date sets of reference sequences. Bioinformatics 36 (suppl.1), pp. i12 - i20 (2020)

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Yagi, M.; Kabata, M.; Tanaka, A.; Ukai, T.; Ohta, S.; Nakabayashi, K.; Shimizu, M.; Hata, K.; Meissner, A.; Yamamoto, T. et al.; Yamada, Y.: Identification of distinct loci for de novo DNA methylation by DNMT3A and DNMT3B during mammalian development. Nature Communications 11, 3199 (2020)

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Melo, U. S.; Schöpflin, R.; Acuna-Hidalgo, R.; Mensah, M. A.; Fischer-Zirnsak, B.; Holtgrewe, M.; Klever, M.-K.; Türkmen, S.; Heinrich, V.; Datkhaeva Pluym, I. et al.; Matoso, E.; de Sousa, S. B.; Louro, P.; Hülsemann, W.; Cohen, M.; Dufke, A.; Latos-Bieleńska, A.; Vingron, M.; Kalscheuer, V.; Quintero-Rivera, F.; Spielmann, M.; Mundlos, S.: Hi-C Identifies Complex Genomic Rearrangements and TAD-Shuffling in Developmental Diseases. The American Journal of Human Genetics 106 (6), pp. 872 - 884 (2020)

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Herdt, O.; Reich, S.; Medenbach, J.; Timmermann, B.; Olofsson, D.; Preußner, M.; Heyd, F.: The zinc finger domains in U2AF26 and U2AF35 have diverse functionalities including a role in controlling translation. RNA Biology 17 (6), pp. 843 - 856 (2020)

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Hoehe, M. R.; Thibaut, F.: Going digital: how technology use may influence human brains and behaviour. Dialogues in Clinical Neuroscience 22 (2), pp. 93 - 97 (2020)

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Moeinzadeh, M.-H.; Yang, Jun; Muzychenko, E.; Gallone, G.; Heller, D.; Reinert, K.; Haas, S.; Vingron, M.: Ranbow: A fast and accurate method for polyploid haplotype reconstruction. PLOS Computational Biology 16 (5), e1007843 (2020)

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Basu, S.; Mackowiak, S.; Niskanen, H.; Knezevic, D.; Asimi, V.; Grosswendt, S.; Geertsema, H.; Ali, S.; Jerković, I.; Ewers, H. et al.; Mundlos, S.; Meissner, A.; Ibrahim, D. M.; Hnisz, D.: Unblending of Transcriptional Condensates in Human Repeat Expansion Disease. Cell 181 (5), pp. 1062 - 1079 (2020)

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Witt, N.; Andreotti, S.; Busch, A.; Neubert, K.; Reinert, K.; Tomaso, H.; Meierhofer, D.: Rapid and Culture Free Identification of Francisella in Hare Carcasses by High-Resolution Tandem Mass Spectrometry Proteotyping. Frontiers in Microbiology 11, 11:636 (2020)

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Chen, J.; He, R.; Sun, W.; Gao, R.; Peng, Q.; Zhu, L.; Du, Y.; Ma, X.; Guo, X.; Zhang, H. et al.; Tan, C.; Wang, J.; Zhang, W.; Weng, X.; Man, J.; Bauer, H.; Wang, Q. K.; Martin, B. N.; Zhang, C.-J.; Li, X.; Wang, C.: TAGAP instructs Th17 differentiation by bridging Dectin activation to EPHB2 signaling in innate antifungal response. Nature Communications 11 (1), 1913 (2020)

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Mueller, J. C.; Carrete, M.; Boerno, S.; Kuhl, H.; Tella, J. L.; Kempenaers, B.: Genes acting in synapses and neuron projections are early targets of selection during urban colonization. Molecular Ecology 29 (18), pp. 3403 - 3412 (2020)

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Radon, C.; Mittelstädt, G.; Duffus, B. R.; Bürger, J.; Hartmann, T.; Mielke, T.; Teutloff, C.; Leimkühler, S.; Wendler, P.: Cryo-EM structures reveal intricate Fe-S cluster arrangement and charging in Rhodobacter capsulatus formate dehydrogenase. Nature Communications 11, 1912 (2020)

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Burns, M.; Schulz, A. R.; Kunkel, D.; Hönig, M.; Warth, S.; Bengsch, B.; Burns, T.; Reinhardt, J.; Grützkau, A.; Yaspo, M.-L. et al.; Sodenkamp, J.; Hoffmann, U.; Mei, H. E.: Mass Cytometry-A Tool for the Curious: Networking in Berlin. Cytometry Part A 97 (8), pp. 764 - 767 (2020)

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Sahu, A.; Li, N.; Dunkel, I.; Chung, H.-R.: EPIGENE: genome-wide transcription unit annotation using a multivariate probabilistic model of histone modifications. Epigenetics & Chromatin 13 (1), Article 20 (2020)

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Pockrandt, C. M.; Alzamel, M.; Iliopoulos, C. S.; Reinert, K.: GenMap: Ultra-fast Computation of Genome Mappability. Bioinformatics 36 (12), pp. 3687 - 3692 (2020)

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Popovitchenko, T.; Park, Y.; Page, N. F.; Luo, X.; Krsnik, Z.; Liu, Y.; Salamon, I.; Stephenson, J. D.; Kraushar, M.; et al: Translational derepression of Elavl4 isoforms at their alternative 5′ UTRs determines neuronal development. Nature Communications 11 (1), 1674 (2020)

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Haltenhof, T.; Kotte, A.; De Bortoli, F.; Schiefer, S.; Meinke, S.; Emmerichs, A.-K.; Petermann, K. K.; Timmermann, B.; Imhof, P.; Franz, A. et al.; Loll, B.; Wahl, M. C.; Preußner, M.; Heyd , F.: A Conserved Kinase-Based Body-Temperature Sensor Globally Controls Alternative Splicing and Gene Expression. Molecular Cell 78 (1), pp. 57 - 69 (2020)

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Benner, P.; Vingron, M.: ModHMM: A Modular Supra-Bayesian Genome Segmentation Method. Journal of Computational Biology 27 (4), pp. 442 - 457 (2020)

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Huyghe, A.; Furlan, G.; Ozmadenci, D.; Galonska, C.; Charlton, J.; Gaume, X.; Combémorel, N.; Riemenschneider, C.; Allègre, N.; Zhang, J. et al.; Wajda, P.; Rama, N.; Vieugué, P.; Durand, I.; Brevet , M.; Gadot, N.; Imhof, T.; Merrill , B. J.; Koch, M.; Mehlen, P.; Chazaud, C.; Meissner, A.; Lavial , F.: Netrin-1 promotes naive pluripotency through Neo1 and Unc5b co-regulation of Wnt and MAPK signalling. Nature Cell Biology 22 (4), pp. 389 - 400 (2020)

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Herkt, C. E.; Caffrey, B.; Surmann, K.; Blankenburg, S.; Gesell Salazar, M.; Jung, A. L.; Herbel, S. M.; Hoffmann, K.; Schulte, L. N.; Chen, W. et al.; Sittka-Stark, A.; Völker, U.; Vingron, M.; Marsico, A.; Bertrams, W.; Schmeck, B.: A MicroRNA Network Controls Legionella pneumophila Replication in Human Macrophages via LGALS8 and MX1. mBio 11 (2), e03155-19 (2020)

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Ibrahim, D. M.; Mundlos, S.: The role of 3D chromatin domains in gene regulation: a multi-facetted view on genome organization. Current Opinion in Genetics & Development 61, pp. 1 - 8 (2020)

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Journal Article (71)