The following publications were published exclusively under the affiliation of the Max Planck Society. For publications by the principal investigator outside of the Max Planck Society, see the links on the lower left.

Conference Paper (62)

Conference Paper
Pesic, M.; Narayanareddy, G. C.; Rettig, A.; Pfau, M.; Kovacsovics, A.; Eckert, C.; Yaspo, M. L.: The testicular niche – heterogeneity in leukemic cell adaptation to the new immunemicroenvironment. 35. Jahrestagung der Kind-Philipp-Stiftung für pädiatrisch onkologische Forschung, Wilsede, June 05, 2024 - June 08, 2024. Klinische Pädiatrie 236 (03), Article 211, (2024)
Conference Paper
Loske, J.; Völler, M.; Lukassen, S. ....; Lorenz, S.; Klages, S.; Eils, R. e. a.: Pharmakologische Aktivierung der CFTR-Funktion verbessert die Homöostase des Atemwegsepithels und die Immunabwehr bei Kindern mit Mukoviszidose. 45. Jahrestagung der Gesellschaft für Pädiatrische Pneumologie, Bochum, March 14, 2024 - March 16, 2024. Klinische Pädiatrie 236 (02), Article S23, (2024)
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Li, Z.; Peluffo, G.; Stevens, L.; Qiu, X.; Seehawer, M.; Huang, X.-Y.; Egri, S.; Papanastasiou, M.; Kingston, N.; D'Santos, C. et al.; Papachristou, E.; Nishida, J.; Evans, K.; Seo, J.-H.; Clement, K.; Temko, D.; Ekram, M.; Rees, M.; Ronan, M.; Roth, J.; Simeonov, A.; Kales, S.; Rai, G.; Lal-Nag, M.; Maloney, D.; Jadhav, A.; Michor, F.; Meissner, A.; Balko, J.; Carroll, J.; Freedman, M.; Long, H.; Jaffe, J.; Polyak, K.: KDM4C histone demethylase connects redox balance to chromatin remodeling via histone H3 tail clipping. AACR Special Conference on Cancer Research - Advances in Breast Cancer Research, San Diego, CA, October 19, 2023 - October 22, 2023. Cancer Research 84 (Suppl. 1), Article B008, (2024)
Conference Paper
Cifuentes Fontanals, L.; Tonello, E.; Siebert, H.: Computing trap space-based control strategies for Boolean networks using answer set programming. In: AIP Conference Proceedings 2611, Vol. 2611, 110002. International Conference of Computational Methods in Sciences and Engineering ICCMSE 2021, Heraklion, Greece, September 04, 2021 - September 07, 2021. AIP Publishing, College Park, Maryland (2022)
Conference Paper
Knaust, M.; Seiler, E.; Reinert, K.; Steinke, T.: Co-Design for Energy Efficient and Fast Genomic Search: Interleaved Bloom Filter on FPGA. In: FPGA '22, pp. 180 - 189. FPGA '22: Proceedings of the 2022 ACM/SIGDA International Symposium on Field-Programmable Gate Arrays, Virtual Event, February 27, 2022 - March 01, 2022. Association for Computing Machinery, New York, NY (2022)
Conference Paper
Klarner, H.; Tonello, E.; Cifuentes Fontanals, L.; Janody, F.; Chaouiya, C.; Siebert, H.: Detection of markers for discrete phenotypes. In: CSBio2021, pp. 64 - 68. CSBio2021: The 12th International Conference on Computational Systems-Biology and Bioinformatics, Virtual Event, October 14, 2021 - October 15, 2021. Association for Computing Machinery, New York, NY (2021)
Conference Paper
Meissner, A.; Hirsch, C.; Fritz, G.; Adjaye, J.; Schupp, N.: iPSC differentiating into renal proximal tubular cells are vulnerable to oxidative stress. 27th Annual Conference of the Society-for-Redox-Biology-and-Medicine (SfRBM) (Virtual meeting), November 18, 2020 - November 20, 2020. Free Radical Biology and Medicine 159, pp. S109 - S110 (2020)
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Klever, M.-K.; Sträng, E.; Jungnitsch, J.; Melo, U. S.; Hetzel, S.; Dolnik, A.; Schöpflin, R.; Schrezenmeier, J. F.; Blau, O.; Westermann, J. et al.; Döhner, K.; Schrezenmeier, H.; Spielmann, M.; Meissner, A.; Mundlos, S.; Bullinger, L.: Integration of Hi-C and Nanopore Sequencing for Structural Variant Analysis in AML with a Complex Karyotype: (Chromothripsis)². 62nd Annual Meeting and Exposition of the American Society of Hematology (ASH) (Virtual meeting), December 05, 2020 - December 08, 2020. Blood 136, Article 28, (2020)
Conference Paper
Knisbacher, B. A.; Lin, Z.; Hahn, C. K.; Nadeu, F.; Duran-Ferrer, M.; Stevenson, K. E.; Tausch, E.; Barbera-Mourelle, A.; Dunford, A.; Anand, S. et al.; Delgado, J.; Hess, J. M.; Taylor-Weiner, A.; Kretzmer, H.; Bousquets Muñoz, P.; Shaughnessy, C. J.; Fernandes, S. M.; Sivina, M.; Rassenti, L. Z.; Meissner, A.; Wiestner, A. ....; Getz, G.: The CLL-1100 Project: Towards Complete Genomic Characterization and Improved Prognostics for CLL. 62nd Annual Meeting and Exposition of the American-Society-of-Hematology (ASH) (Virtual meeting), December 05, 2020 - December 08, 2020. Blood 136, Article 3, (2020)
Conference Paper
Pan, H.; Renaud, L.; Chaligne, R.; Bloehdorn, J.; Tausch, E.; Mertens, D.; Fink, A.-M.; Fischer, K.; Zhang, C.; Betel , D. et al.; Gnirke, A.; Imielinski, M.; Moreaux , J.; Hallek, M.; Meissner, A.; Stilgenbauer, S.; Wu, C. J.; Elemento, O.; Landau, D. A.: Robust Discovery of Candidate DNA Methylation Cancer Drivers. 62nd Annual Meeting and Exposition of the American Society of Hematology (ASH) (Virtual meeting), December 05, 2020 - December 08, 2020. Blood 136, pp. 33 - 34 (2020)
Conference Paper
Cifuentes Fontanals, L.; Tonello, E.; Siebert, H.: Control Strategy Identification via Trap Spaces in Boolean Networks. In: CMSB 2020, part of Lecture Notes in Computer Science 12314, Vol. LNBI 12314, pp. 159 - 175 (Eds. Abate, A.; Petrov, T.; Wolf, V.). 18th International Conference, CMSB 2019: Computational Methods in Systems Biology, Konstanz, September 23, 2020 - September 25, 2020. Springer Nature Switzerland AG, Cham, Switzerland (2020)
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Rossmann, M.; Hoi, K.; Chan, V.; Abraham, B.; Yang, S.; Mullahoo, J.; Papanastasiou, M.; Elia, I.; Vyas, S.; Nag, P. et al.; Sullivan, L.; Perlin, J.; Hagedorn, E.; Hetzel, S.; Weigert, R.; Warren, C.; Dorjsuren, B.; Custo Greig, E.; Adatto, I.; Cowan, C.; Schreiber, S.; Young, R.; Meissner, A.; Haigis, M.; Carr, S.; Zon, L.: Transcriptional regulation of mitochondrial metabolism by TIF1γ drives erythroid progenitor differentiation. 49th Annual Scientific Meeting of the ISEH - International Society for Experimental Hematology (Virtual Meeting), New York City, USA, August 19, 2020 - August 21, 2020. Experimental Hematology 88, S35, (2020)
Conference Paper
Nowicka, M.; Siebert, H.: Designing Distributed Cell Classifier Circuits Using a Genetic Algorithm. In: CMSB 2019, part of Lecture Notes in Computer Science 11773, Vol. LNBI 11773, pp. 96 - 119 (Eds. Bortolussi, L.; Sanguinetti, G.). 17th International Conference, CMSB 2019: Computational Methods in Systems Biology, Trieste, Italy, September 18, 2019 - September 20, 2019. Springer Nature Switzerland AG, Cham, Switzerland (2019)
Conference Paper
Rohrandt, C.; Kraft, N.; Gießelmann, P.; Brändl, B.; Schuldt, B. M.; Jetzek, U.; Müller, F.-J.: Nanopore SimulatION – a raw data simulator for Nanopore Sequencing. In: 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), pp. 1536 - 1543. 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), Madrid, Spain, December 03, 2018 - December 06, 2018. (2019)
Conference Paper
Schöpflin, R.; Andrey, G.; Heinrich, V.; Franke, M.; Ibrahim, D.; Paliou, C.; Mundlos, S.; Vingron, M.: Identification of potential regulatory elements in Capture-C interaction profiles. In: Genome Regulation in 3D. Genome Regulation in 3D, Rehovot, Israel, June 28, 2015 - June 30, 2015. Weizmann Institute, Rehovot, Israel (2015)
Conference Paper
Schöpflin, R.; Vingron, M.: Identification of cis-regulatory elements from chromosome conformation capture data. In: 19th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2015). 19th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2015), Warsaw, Poland, April 12, 2015 - April 15, 2015. (2015)
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Singer, T.; Snower, D. J.: Caring economics. In: Proceedings of the Annual Conference of the Institute for New Economic Thinking. Annual Conference. Institute for New Economic Thinking, Paris, April 08, 2015 - April 11, 2015. (2015)
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Jones, D. T. W.; Hovestadt, V.; Picelli, S.; Wang, W.; Northcott, P. A.; Kool, M.; Reifenberger, G.; Pietsch, T.; Sultan, M.; Lehrach, H. et al.; Yaspo-Lehrach, M. L.; Borkhardt, A.; Landgraf, P.; Eils, R.; Korshunov, A.; Zapatka, M.; Radlwimmer, B.; Pfister, S. M.; Lichter, P.: The Medulloblastoma Methylome Reveals New Epigenetic Regulatory Mechanisms. In: Neuro-Oncology, Vol. 15, p. 144 - 144. 4th Quadrennial Meeting of the World Federation of Neuro-Oncology held in conjunction with the 18th Annual SNO Scientific Meeting and Eucation Day, San Francisco, November 21, 2013 - November 24, 2013. (2013)
Conference Paper
Sudbrak, R.; Lehrach, H.: IT Future of Medicine (ITFoM). In: Proceedings Iwbbio 2013: International Work-Conference on Bioinformatics and Biomedical Engineering, p. 335 - 335. International Work-Conference on Bioinformatics and Biomedical Engineering, IWBBIO 2013, Granada, Spain, March 18-20, 2013. Proceedings. , Grenada, March 18, 2013 - March 20, 2013. (2013)
Conference Paper
Gorgolewski, K. J.; Bazin, P.-L.; Engen, H. G.; Margulies, D. S.: Fifty Shades of Gray, Matter: Using Bayesian priors to improve the power of whole-brain voxel- and connexelwise inferences. In: 2013 International Workshop on Pattern Recognition in NeuroImaging (PRNI). (2013)
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