Publications

Max Planck Institute for Molecular Genetics

The following publications were published exclusively under the affiliation of the Max Planck Society. For publications by the principal investigator outside of the Max Planck Society, see the links on the lower left.

Journal Article (3386)

Journal Article

Glaser, L. V.; Steiger, M.; Fuchs, A.; van Bömmel, A.; Einfeldt, E.; Chung, H.-R.; Vingron, M.; Meijsing, S. H.: Assessing genome-wide dynamic changes in enhancer activity during early mESC differentiation by FAIRE-STARR-seq. Nucleic Acids Research (London) 49 (21), pp. 12178 - 12195 (2021)

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Geanta, M.; Tanwar, A. S.; Lehrach, H.; Satyamoorthy, K.; Brand, A.: Horizon Scanning: Rise of Planetary Health Genomics and Digital Twins for Pandemic Preparedness. OMICS: A Journal of Integrative Biology 26 (2), pp. 93 - 100 (2021)

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Keil, M.; Conrad, T.; Becker, M.; Keilholz, U.; Yaspo, M.-L.; Lehrach, H.; Schütte, M.; Haybaeck, J.; Hoffmann, J.: Modeling of Personalized Treatments in Colon Cancer Based on Preclinical Genomic and Drug Sensitivity Data. Cancers 13 (23), 6018 (2021)

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Hung, K. L.; Yost, K. E.; Xie, L.; Shi, Q.; Helmsauer, K.; Luebeck, J.; Schöpflin, R.; Lange, J. T.; Chamorro González, R.; Weiser, N. E. et al.; Chen, C.; Valieva, M.; Wong, I. T.-L.; Wu, S.; Dehkordi, S. R.; Duffy, C. V.; Kraft, K.; Tang, J.; Belk, J. A.; Rose, J. C.; Corces, M. R.; Granja, J. M.; Li, R.; Rajkumar, U.; Friedlein, J.; Bagchi, A.; Satpathy, A. T.; Tjian, R.; Mundlos, S.; Bafna, V.; Henssen, A. G.; Mischel, P. S.; Liu, Z.; Chang, H. Y.: ecDNA hubs drive cooperative intermolecular oncogene expression. Nature 600 (7890), pp. 731 - 736 (2021)

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Enervald, E.; Powell, L. M.; Boteva, L.; Foti, R.; Ruiz, N. B.; Kibar, G.; Piszczek, A.; Cavaleri, F.; Vingron, M.; Cerase, A. et al.; Buonomo, S. B. C.: RIF1 and KAP1 differentially regulate the choice of inactive versus active X chromosomes. The EMBO Journal 40 (24), e105862 (2021)

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Blanco, M. A.; Sykes, D. B.; Gu, L.; Wu, M.; Petroni, R.; Karnik, R.; Wawer, M.; Rico, J.; Li, H.; Jacobus, W. D. et al.; Jambhekar, A.; Cheloufi, S.; Meissner, A.; Hochedlinger, K.; Scadden, D. T.; Shi, Y.: Chromatin-state barriers enforce an irreversible mammalian cell fate decision. Cell Reports 37 (6), 109967 (2021)

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Andergassen, D.; Smith, Z. D.; Kretzmer, H.; Rinn, J. L.; Meissner, A.: Diverse epigenetic mechanisms maintain parental imprints within the embryonic and extraembryonic lineages. Developmental Cell 56 (21), pp. 2995 - 3005 (2021)

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Teixeira, H.; Salmona, J.; Arredondo, A.; Mourato, B.; Manzi , S.; Rakotondravony, R.; Mazet, O.; Chikhi, L.; Metzger, J.; Radespiel, U.: Impact of model assumptions on demographic inferences: the case study of two sympatric mouse lemurs in northwestern Madagascar. BMC Ecology and Evolution 21 (1), 197 (2021)

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Hetzel, S.; Gießelmann, P.; Reinert, K.; Meissner, A.; Kretzmer, H.: RLM: Fast and simplified extraction of Read-Level Methylation metrics from bisulfite sequencing data. Bioinformatics 37 (21), pp. 3934 - 3935 (2021)

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Vowinckel , J.; Hartl, J.; Marx, H.; Kerick, M.; Runggatscher, K.; Keller, M. A.; Mülleder, M.; Day, J.; Weber, M.; Rinnerthaler, M. et al.; Yu, J. S. L.; Kaur Aulakh, S.; Lehmann, A.; Mattanovich, D.; Timmermann, B.; Zhang, N.; Dunn, C. D.; MacRae, J. I.; Breitenbach, M.; Ralser, M.: The metabolic growth limitations of petite cells lacking the mitochondrial genome. Nature Metabolism 3, pp. 1521 - 1535 (2021)

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Benner, P.; Vingron, M.: Quantifying the tissue-specific regulatory information within enhancer DNA sequences. NAR: genomics and bioinformatics 3 (4), lqab095 (2021)

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Melo, U. S.; Piard, J.; Fischer-Zirnsak, B.; Klever, M.-K.; Schöpflin, R.; Atta Mensah, M.; Holtgrewe, M.; Arbez-Gindre, F.; Martin, A.; Guigue, V. et al.; Gaillard, D.; Landais, E.; Roze, V.; Kremer, V.; Ramanah, R.; Cabrol, C.; Harms, F. L.; Kornak, U.; Spielmann, M.; Mundlos, S.; Van Maldergem, L.: Complete lung agenesis caused by complex genomic rearrangements with neo-TAD formation at the SHH locus. Human Genetics 140 (10), pp. 1459 - 1469 (2021)

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Kage, D.; Heinrich, K.; von Volkmann, K.; Kirsch, J.; Feher, K.; Giesecke-Thiel, C.; Kaiser , T.: Multi-angle pulse shape detection of scattered light in flow cytometry for label-free cell cycle classification. Communications Biology 4, 1144 (2021)

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Heyder, N. A.; Kleinau, G.; Speck, D.; Schmidt, A.; Paisdzior, S.; Szczepek, M.; Bauer, B.; Koch, A.; Gallandi, M.; Kwiatkowski, D. et al.; Bürger, J.; Mielke, T.; Beck-Sickinger, A. G.; Hildebrand, P. W.; Spahn, C. M. T.; Hilger, D.; Schacherl, M.; Biebermann, H.; Hilal, T.; Kühnen, P.; Kobilka, B. K.; Scheerer, P.: Structures of active melanocortin-4 receptor−Gs-protein complexes with NDP-α-MSH and setmelanotide. Cell Research 31 (11), pp. 1176 - 1189 (2021)

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Volkenandt, S.; Beierlein, F.; Imhof, P.: Interaction of Thymine DNA Glycosylase with Oxidised 5-Methyl-cytosines in Their Amino- and Imino-Forms. Molecules 26 (19), 5728 (2021)

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Teixeira, H.; Montade, V.; Salmona, J.; Metzger, J.; Bremond, L. e. a.: Past environmental changes affected lemur population dynamics prior to human impact in Madagascar. Communications Biology 4 (1), 1084 (2021)

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Mendez, P.-L.; Obendorf, L.; Knaus, P.: Visualization and Quantification of TGFβ/BMP/SMAD Signaling under Different Fluid Shear Stress Conditions using Proximity-Ligation-Assay. Journal of Visualized Experiments, 175 (2021)

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Arnold, M.; Bressin, A.; Jasnovidova, O.; Meierhofer, D.; Mayer, A.: A BRD4-mediated elongation control point primes transcribing RNA polymerase II for 3′-processing and termination. Molecular Cell 81 (17), pp. 3589 - 3603 (2021)

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Socha, M.; Sowińska-Seidler, A.; Melo, U. S.; Kragesteen, B. K.; Franke, M.; Heinrich, V.; Schöpflin, R.; Nagel, I.; Gruchy, N.; Mundlos, S. et al.; Sreenivasan, V. K. A.; López, C.; Vingron, M.; Bukowska-Olech, E.; Spielmann, M.; Jamsheer, A.: Position effects at the FGF8 locus are associated with femoral hypoplasia. The American Journal of Human Genetics 108 (9), pp. 1725 - 1734 (2021)

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Gu, H.; Raman, A. T.; Wang, X.; Gaiti, F.; Chaligne, R.; Mohammad, A. W.; Arczewska, A. A.; Smith, Z. D.; Landau, D. A.; Aryee, M. J. et al.; Meissner, A.; Gnirke, A.: Smart-RRBS for single-cell methylome and transcriptome analysis. Nature Protocols 16, pp. 4004 - 4030 (2021)

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