Journal Article (940)

21.
Journal Article
Prasse , P.; Iversen , P.; Lienhard, M.; Thedinga, K.; Bauer, C.; Herwig, R.; Scheffer, T.: Matching anticancer compounds and tumor cell lines by neural networks with ranking loss. NAR: genomics and bioinformatics 4 (1), lqab128 (2022)
22.
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Sivkina, A. L.; Karlova, M. G.; Valieva, M. E.; McCullough, L. L.; Formosa, T.; Shaytan, A. K.; Feofanov, A. V.; Kirpichnikov, M. P.; Sokolova, O. S.; Studitsky, V. M.: Electron microscopy analysis of ATP-independent nucleosome unfolding by FACT. Communications Biology 5 (1), (1):2 (2022)
23.
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Gjaltema, R.; Schwämmle, T.; Kautz, P.; Robson, M.; Schöpflin, R.; Lustig, L. R.; Brandenburg, L.; Dunkel, I.; Vechiatto, C.; Ntini, E. et al.; Mutzel, V.; Schmiedel, V.; Marsico, A.; Mundlos, S.; Schulz, E. G.: Distal and proximal cis-regulatory elements sense X chromosome dosage and developmental state at the Xist locus. Molecular Cell 82, pp. 1 - 19 (2022)
24.
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Winkler, J.; Urgese, G.; Ficarra, E.; Reinert, K.: LaRA 2: parallel and vectorized program for sequence–structure alignment of RNA sequences. BMC Bioinformatics 23, 18 (2022)
25.
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Halecker, S.; Metzger, J.; Strube, C.; Krabben, L.; Kaufer, B.; Denner, J.: Virological and Parasitological Characterization of Mini-LEWE Minipigs Using Improved Screening Methods and an Overview of Data on Various Minipig Breeds. Microorganisms 9 (12), (12):2617 (2021)
26.
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Smajić, S.; Prada-Medina, C. A.; Landoulsi, Z.; Ghelfi, J.; Delcambre, S.; Dietrich, C.; Henck, J.; Balachandran, S.; Pachchek, S.; Morris, C. M. et al.; Antony, P.; Timmermann, B.; Sauer, S.; Pereira, S. L.; Schwamborn, J. C.; May, P.; Grünewald, A.; Spielmann, M.: Single-cell sequencing of human midbrain reveals glial activation and a Parkinson-specific neuronal state. Brain 2021, awab446 (2021)
27.
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Schifferl, D.; Scholze-Wittler, M.; Wittler, L.; Veenvliet, J. V.; Koch, F.; Herrmann, B. G.: A 37 kb region upstream of brachyury comprising a notochord enhancer is essential for notochord and tail development. Development 148 (23), dev200059 (2021)
28.
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Thedinga, K.; Herwig, R.: A gradient tree boosting and network propagation derived pan-cancer survival network of the tumor microenvironment. iScience 25 (1), 103617 (2021)
29.
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Broecker, F.; Mölling, K.: The Roles of the Virome in Cancer. Microorganisms 9 (12), 2538 (2021)
30.
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Glaser, L. V.; Steiger, M.; Fuchs, A.; van Bömmel, A.; Einfeldt, E.; Chung, H.-R.; Vingron, M.; Meijsing, S. H.: Assessing genome-wide dynamic changes in enhancer activity during early mESC differentiation by FAIRE-STARR-seq. Nucleic Acids Research (London) 49 (21), gkab1100, pp. 12178 - 12195 (2021)
31.
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Geanta, M.; Tanwar, A. S.; Lehrach, H.; Satyamoorthy, K.; Brand, A.: Horizon Scanning: Rise of Planetary Health Genomics and Digital Twins for Pandemic Preparedness. OMICS: A Journal of Integrative Biology 26, 0062 (2021)
32.
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Keil, M.; Conrad, T.; Becker, M.; Keilholz, U.; Yaspo, M.-L.; Lehrach, H.; Schütte, M.; Haybaeck, J.; Hoffmann, J.: Modeling of Personalized Treatments in Colon Cancer Based on Preclinical Genomic and Drug Sensitivity Data. cancers 13 (23), 6018 (2021)
33.
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Kamburov, A.; Herwig, R.: ConsensusPathDB 2022: molecular interactions update as a resource for network biology. Nucleic Acids Research, gkab1128 (2021)
34.
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Hung, K. L.; Yost, K. E.; Xie, L.; Shi, Q.; Helmsauer, K.; Luebeck, J.; Schöpflin, R.; Lange, J. T.; Chamorro González, R.; Weiser, N. E. et al.; Chen, C.; Valieva, M.; Wong, I. T.-L.; Wu, S.; Dehkordi, S. R.; Duffy, C. V.; Kraft, K.; Tang, J.; Belk, J. A.; Rose, J. C.; Corces, M. R.; Granja, J. M.; Li, R.; Rajkumar, U.; Friedlein, J.; Bagchi, A.; Satpathy, A. T.; Tjian, R.; Mundlos, S.; Bafna, V.; Henssen, A. G.; Mischel, P. S.; Liu, Z.; Chang, H. Y.: ecDNA hubs drive cooperative intermolecular oncogene expression. Nature 600, pp. 731 - 736 (2021)
35.
Journal Article
Enervald, E.; Powell, L. M.; Boteva, L.; Foti, R.; Ruiz, N. B.; Kibar, G.; Piszczek, A.; Cavaleri, F.; Vingron, M.; Cerase, A. et al.; Buonomo, S. B. C.: RIF1 and KAP1 differentially regulate the choice of inactive versus active X chromosomes. The EMBO Journal 40, e105862 (2021)
36.
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Blanco, M. A.; Sykes, D. B.; Gu, L.; Wu, M.; Petroni, R.; Karnik, R.; Wawer, M.; Rico, J.; Li, H.; Jacobus, W. D. et al.; Jambhekar, A.; Cheloufi, S.; Meissner, A.; Hochedlinger, K.; Scadden, D. T.; Shi, Y.: Chromatin-state barriers enforce an irreversible mammalian cell fate decision. Cell Reports 37 (6), 109967 (2021)
37.
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Andergassen, D.; Smith, Z. D.; Kretzmer, H.; Rinn, J. L.; Meissner, A.: Diverse epigenetic mechanisms maintain parental imprints within the embryonic and extraembryonic lineages. Developmental Cell 56 (21), e4, pp. 2995 - 3005 (2021)
38.
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Hetzel, S.; Gießelmann, P.; Reinert, K.; Meissner, A.; Kretzmer, H.: RLM: Fast and simplified extraction of Read-Level Methylation metrics from bisulfite sequencing data. Bioinformatics 37 (21), pp. 3934 - 3935 (2021)
39.
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Vowinckel , J.; Hartl, J.; Marx, H.; Kerick, M.; Runggatscher, K.; Keller, M. A.; Mülleder, M.; Day, J.; Weber, M.; Rinnerthaler, M. et al.; Yu, J. S. L.; Kaur Aulakh, S.; Lehmann, A.; Mattanovich, D.; Timmermann, B.; Zhang, N.; Dunn, C. D.; MacRae, J. I.; Breitenbach, M.; Ralser, M.: The metabolic growth limitations of petite cells lacking the mitochondrial genome. Nature Metabolism 3, pp. 1521 - 1535 (2021)
40.
Journal Article
Benner, P.; Vingron, M.: Quantifying the tissue-specific regulatory information within enhancer DNA sequences. NAR: genomics and bioinformatics 3 (4), lqab095 (2021)
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