Publications of Frederic Koch

Tsaytler, P.; Blaess, G.; Scholze-Wittler, M.; Meierhofer, D.; Wittler, L.; Koch, F.; Herrmann, B. G.: SRF promotes long-range chromatin loop formation and stem cell pluripotency. Cell Reports 43 (10), 114846 (2024)

Tsaytler, P.; Blaess, G.; Scholze-Wittler, M.; Koch, F.; Herrmann, B. G.: Early neural specification of stem cells is mediated by a set of SOX2-dependent neural-associated enhancers. Stem Cell Reports 19 (5), pp. 618 - 628 (2024)

Schifferl, D.; Scholze-Wittler, M.; Villaronga Luque, A.; Pustet , M.; Wittler, L.; Veenvliet, J. V.; Koch, F.; Herrmann, B. G.: Genome-wide identification of notochord enhancers comprising the regulatory landscape of the Brachyury (T) locus in mouse. Development 150 (22), dev202111 (2023)

Tsaytler, P.; Liu, J.; Blaess, G.; Schifferl, D.; Veenvliet, J. V.; Wittler, L.; Timmermann, B.; Herrmann, B. G.; Koch, F.: BMP4 triggers regulatory circuits specifying the cardiac mesoderm lineage. Development, dev.201450 (2023)

Schifferl, D.; Scholze-Wittler, M.; Wittler, L.; Veenvliet, J. V.; Koch, F.; Herrmann, B. G.: A 37 kb region upstream of brachyury comprising a notochord enhancer is essential for notochord and tail development. Development 148 (23), dev200059 (2021)

Veenvliet, J. V.; Bolondi, A.; Kretzmer, H.; Haut, L.; Scholze-Wittler, M.; Schifferl, D.; Koch, F.; Guignard, L.; Sampath Kumar, A.; Pustet, M. et al.; Heimann, S.; Buschow, R.; Wittler, L.; Timmermann, B.; Meissner, A.; Herrmann, B. G.: Mouse embryonic stem cells self-organize into trunk-like structures with neural tube and somites. Science 370 (6522), eaba4937 (2020)

Koch, F.; Scholze, M.; Wittler, L.; Schifferl, D.; Sudheer, S.; Grote, P.; Timmermann, B.; Macura, K.; Herrmann, B. G.: Antagonistic Activities of Sox2 and Brachyury Control the Fate Choice of Neuro-Mesodermal Progenitors. Developmental Cell 42, pp. 514 - 526 (2017)

Cauchy, P.; Koch, F.; Andrau, J.-C.: Two possible modes of pioneering associated with combinations of H2A.Z and p300/CBP at nucleosome-occupied enhancers. Transcription 8 (3), pp. 179 - 184 (2017)

Fenouil, R.; Descostes, N.; Spinelli, .; Koch, F.; Maqbool, M. A.; Benoukraf, T.; Cauchy, P.; Innocenti , C.; Ferrier , P.; Andrau, J.-C.: Pasha: a versatile R package for piling chromatin HTS data. Bioinformatics 32 (16), pp. 2528 - 2530 (2016)

Descostes, N.; Heidemann, M.; Spinelli, L.; Schüller, R.; Maqbool, M. A.; Fenouil, R.; Koch, F.; Innocenti, C.; Gut, M.; Gut, I. et al.; Eick, D.; Andrau, J.-C.: Tyrosine phosphorylation of RNA polymerase II CTD is associated with antisense promoter transcription and active enhancers in mammalian cells. eLife 3, e02105 (2014)