Publications of Ilona Dunkel

Journal Article (25)

1.
Journal Article
Ravid Lustig, L.; Sampath Kumar, A.; Schwämmle, T.; Dunkel, I.; Noviello, G.; Limberg, E.; Weigert, R.; Pacini, G.; Buschow, R.; Ghauri, A. et al.; Stötzel, M.; Wittler, L.; Meissner, A.; Schulz, E. G.: GATA transcription factors drive initial Xist upregulation after fertilization through direct activation of long-range enhancers. Nature Cell Biology 25, pp. 1704 - 1715 (2023)
2.
Journal Article
de Sousa, J. A.; Wong, C.-W.; Dunkel, I.; Owens, T.; Voigt, P.; Hodgson, A.; Baker, D.; Schulz, E. G.; Reik, W.; Smith, A. et al.; Rostovskaya, M.; von Meyenn, F.: Epigenetic dynamics during capacitation of naïve human pluripotent stem cells. Science Advances 9 (39), eadg1936 (2023)
3.
Journal Article
Sultana, Z.; Dorel, M.; Klinger, B.; Sieber, A.; Dunkel, I.; Blüthgen, N.; Schulz, E. G.: Modeling unveils sex differences of signaling networks in mouse embryonic stem cells. Molecular Systems Biology, e11510 (2023)
4.
Journal Article
Gjaltema, R.; Schwämmle, T.; Kautz, P.; Robson, M.; Schöpflin, R.; Lustig, L. R.; Brandenburg, L.; Dunkel, I.; Vechiatto, C.; Ntini, E. et al.; Mutzel, V.; Schmiedel, V.; Marsico, A.; Mundlos, S.; Schulz, E. G.: Distal and proximal cis-regulatory elements sense X chromosome dosage and developmental state at the Xist locus. Molecular Cell 82 (1), pp. 190 - 208 (2022)
5.
Journal Article
Gjaltema, R. A. F.; Schwämmle, T.; Kautz, P.; Robson, M.; Schöpflin, R.; Ravid Lustig, L.; Brandenburg, L.; Dunkel, I.; Vechiatto, C.; Ntini, E. et al.; Mutzel, V.; Schmiedel, V.; Marsico, A.; Mundlos, S.; Schulz, E. G.: Distal and proximal cis-regulatory elements sense X-chromosomal dosage and developmental state at the Xist locus. Molecular Cell 82 (1), e17, pp. 190 - 208 (2022)
6.
Journal Article
Pacini, G.; Dunkel, I.; Mages, N.; Mutzel, V.; Timmermann, B.; Marsico, A.; Schulz, E. G.: Integrated analysis of Xist upregulation and X-chromosome inactivation with single-cell and single-allele resolution. Nature Communications 12 (1), 3638 (2021)
7.
Journal Article
Genolet, O.; Monaco, A. A.; Dunkel, I.; Boettcher, M.; Schulz, E. G.: Identification of X-chromosomal genes that drive global X-dosage effects in mammals. Genome Biology 22, 110 (2021)
8.
Journal Article
Sahu, A.; Li, N.; Dunkel, I.; Chung, H.: EPIGENE: genome-wide transcription unit annotation using a multivariate probabilistic model of histone modifications. Epigenetics & Chromatin 13, 13:20 (2020)
9.
Journal Article
Grunert, M.; Appelt, S.; Dunkel, I.; Berger, F.; Sperling, S. R.: Altered microRNA and target gene expression related to Tetralogy of Fallot. Scientific Reports 9, 19063 (2019) (2019)
10.
Journal Article
Barros de Andrade e Sousa, L.; Jonkers, I.; Syx, L.; Dunkel, I.; Chaumeil, J.; Picard, C.; Foret, B.; Chen, C.-J.; Lis, J. T.; Heard, E. et al.; Schulz, E. G.; Marsico, A.: Kinetics of Xist-induced gene silencing can be predicted from combinations of epigenetic and genomic features. Genome Research 29 (7), pp. 1087 - 1099 (2019)
11.
Journal Article
Mutzel, V.; Okamoto, I.; Dunkel, I.; Saitou, M.; Giorgetti, L.; Heard, E.; Schulz, E. G.: A symmetric toggle switch explains the onset of random X inactivation in different mammals. Nature Structural and Molecular Biology 26 (5), pp. 350 - 360 (2019)
12.
Journal Article
Kinkley, S.; Helmuth, J.; Polansky, J. K.; Dunkel, I.; Gasparoni, G.; Fröhler, S.; Chen, W.; Walter, J.; Hamann, A.; Chung, H.-R.: reChIP-seq reveals widespread bivalency of H3K4me3 and H3K27me3 in CD4+ memory T-Cells. Nature Communications 7, 7:12514 (2016)
13.
Journal Article
Chung, H.-R.; Xu, C.; Fuchs, A.; Mund, A.; Lange, M.; Staege, H.; Schubert, T.; Bian, C.; Dunkel, I.; Eberharter, A. et al.; Regnard, C.; Klinker, H.; Meierhofer, D.; Cozzuto, L.; Winterpracht, A.; Di Croce, L.; Min, J.; Will, H.; Kinkley, S.: PHF13 is a molecular reader and transcriptional co-regulator of H3K4me2/3. eLife 5, 5:e10607 (2016)
14.
Journal Article
Cui, H.; Schlesinger, J.; Bansal, V.; Dunkel, I.; Meierhofer, D.; Rickert-Sperling, S.: 5Regulation of myogenesis via kinase driven activation of DPF3a, a BAF complex member and its interaction with transcription repressor HEY1. Cardiovascular Research 103 (Suppl 1), S 1 (2014)
15.
Journal Article
Grunert, M.; Dorn, C.; Schueler, M.; Dunkel, I.; Schlesinger, J.; Mebus, S.; Alexi-Meskishvili, V.; Perrot, A.; Wassilew, K.; Timmermann, B. et al.; Hetzer, R.; Berger, F.; Sperling, S. R.: Rare and Private Variations in Neural Crest, Apoptosis and Sarcomere Genes Define the Polygenic Background of Isolated Tetralogy of Fallot. Human Molecular Genetics 23 (12), pp. 3115 - 3128 (2014)
16.
Journal Article
Schlesinger, J.; Schueler, M.; Grunert, M.; Fischer, J. J.; Zhang, Q.; Krueger, T.; Lange, M.; Tönjes, M.; Dunkel, I.; Sperling, S.: The Cardiac Transcription Network Modulated by Gata4, Mef2a, Nkx2.5, Srf, Histone Modifications, and MircoRNAs. PLoS Genetics 7 (2), e1001313 (2011)
17.
Journal Article
Chung, H.-R.; Dunkel, I.; Heise, F.; Linke, C.; Krobitsch, S.; Ehrenhofer-Murray, A. E.; Sperling, S. R.; Vingron, M.: The effect of MNase on nucleosome positioning data. PLoS ONE 5 (12), p. e15754 - e15754 (2010)
18.
Journal Article
Schlesinger, J.; Tönjes, M.; Schueler, M.; Zhang, Q.; Dunkel, I.; Sperling, S. R.: Evaluation of the LightCycler(R) 1536 Instrument for high-throughput quantitative real-time PCR. Methods 50 (4), pp. S19 - S22 (2010)
19.
Journal Article
Schlesinger, J.; Tönjes, M.; Schueler, M.; Zhang, Q.; Dunkel, I.; Sperling, S. R.: Evaluation of the LightCycler(R) 1536 Instrument for high-throughput quantitative real-time PCR. Methods 50 (4), pp. S19 - S22 (2010)
20.
Journal Article
Lange, M.; Kaynak, B.; Forster, U. B.; Tönjes, M.; Fischer, J. J.; Grimm, C.; Schlesinger, J.; Just, S.; Dunkel, I.; Krueger, T. et al.; Mebus, S.; Lehrach, H.; Lurz, R.; Gobom, J.; Rottbauer, W.; Abdelilah-Seyfried, S.; Sperling, S.: Regulation of muscle development by DPF3, a novel histone acetylation and methylation reader of the BAF chromatin remodeling complex. Genes and Development 22 (17), pp. 2370 - 2384 (2008)
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