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Wesley, B. T.; Ross, A. D. B.; Muraro, D.; Miao, Z.; Saxton, S.; Tomaz, R. A.; Morell, C. M.; Ridley, K.; Zacharis, E. D.; Petrus-Reurer, S. et al.; ...; Vallier, L.: Single-cell atlas of human liver development reveals pathways directing hepatic cell fates. Nature Cell Biology 24 (10), pp. 1487 - 1498 (2022)

Ringel, A.; Szabo, Q.; Chiariello, A. M.; Chudzik, K.; Schöpflin, R.; Rothe, P.; Mattei, A. L.; Zehnder, T.; Harnett, D.; Laupert, V. et al.; Bianco, S.; Hetzel, S.; Glaser, J.; Phan, M. H. Q.; Schindler, M.; Ibrahim, D. M.; Paliou, C.; Esposito, A.; Prada-Medina, C. A.; Haas, S. A.; Giere, P.; Vingron, M.; Wittler, L.; Meissner, A.; Nicodemi, M.; Cavalli, G.; Bantignies, F.; Mundlos, S.; Robson, M. I.: Repression and 3D-restructuring resolves regulatory conflicts in evolutionarily rearranged genomes. Cell 185 (20), pp. 3689 - 3704 (2022)

Mendez, P.-L.; Obendorf, L.; Jatzlau, J.; Burdzinski, W.; Reichenbach, M.; Nageswaran, V.; Haghikia, A.; Stangl, V.; Hiepen, C.; Knaus, P.: Atheroprone fluid shear stress-regulated ALK1-Endoglin-SMAD signaling originates from early endosomes. BMC Biology 20 (1), 210 (2022)

Berndt, N.; Hudert, C. A.; Eckstein, J.; Loddenkemper, C.; Henning, S.; Bufler, P.; Meierhofer, D.; Sack, I.; Wiegand, S.; Wallach, I. et al.; Holzhütter, H.-G.: Alterations of Central Liver Metabolism of Pediatric Patients with Non-Alcoholic Fatty Liver Disease. International Journal of Molecular Sciences 23 (19), 11072 (2022)

Zacharias, M.; Kashofer, K.; Wurm, P.; Regitnig, P.; Schütte, M.; Neger, M.; Ehmann, S.; Marsh, L. M.; Kwapiszewska, G.; Loibner, M. et al.; Birnhuber, A.; Leitner, E.; Thüringer, A.; Winter, E.; Sauer, S.; Pollheimer, M. J.; Vagena, F. R.; Lackner, C.; Jelusic, B.; Ogilvie, L.; Durdevic, M.; Timmermann, B.; Lehrach, H.; Zatloukal, K.; Gorkiewicz, G.: Host and microbiome features of secondary infections in lethal covid-19. iScience 25 (9), 104926 (2022)

Malysheva, N.; Wang, J.; von Kleist, M.: S̲tochastic S̲imulation A̲lgorithm For Effective Spreading Dynamics On T̲ime-Evolving A̲daptive N̲etworX̲ (SSATAN-X). Mathematical modelling of natural phenomena: MMNP 17, 35 (2022)

Altendorfer, E.; Mochalova, Y.; Mayer, A.: BRD4: a general regulator of transcription elongation. Transcription 13 (1-3), pp. 70 - 81 (2022)

Bartoszewicz, J. M.; Nasri, F.; Nowicka, M.; Renard, B. Y.: Detecting DNA of novel fungal pathogens using ResNets and a curated fungi-hosts data collection. Bioinformatics 38 (Suppl.2), pp. ii168 - ii174 (2022)

Darvish, M.; Seiler, E.; Mehringer, S.; Rahn, R.; Reinert, K.: Needle: a fast and space-efficient prefilter for estimating the quantification of very large collections of expression experiments. Bioinformatics 28 (17), pp. 4100 - 4108 (2022)

Kornak, U.; Saha, N.; Keren, B.; Neumann, A.; Taylor Tavares, A. L.; Piard, J.; Kopp, J.; Rodrigues Alves, J. G.; de los Santos, M. R.; El Choubassi, N. et al.; Ehmke, N.; Jäger, M.; Spielmann, M.; Pantel, J. T.; Lejeune, E.; Fauler, B.; Mielke, T.; Hecht, J.; Meierhofer, D.; Strom, T. M.; Laugel, V.; Brice, A.; Mundlos, S.; Bertoli-Avella, A.; Bauer, P.; Heyd, F.; Boute, O.; Dupont, J.; Depienne, C.; Van Maldergem, L.; Fischer-Zirnsak, B.: Alternative splicing of BUD13 determines the severity of a developmental disorder with lipodystrophy and progeroid features. GENETICS IN MEDICINE 24 (9), pp. 1927 - 1940 (2022)

Wittig , A.; Miranda , F.; Hölzer, M.; Altenburg, T.; Bartoszewicz, J. M.; Beyvers, S.; Dieckmann, M. A.; Genske, U.; Giese, S. H.; Nowicka, M. et al.; Richard, H.; Schiebenhoefer, H.; Schmachtenberg, A.-J.; Sieben, P.; Tang, M.; Tembrockhaus, J.; Renard, B. Y.; Fuchs, S.: CovRadar: continuously tracking and filtering SARS-CoV-2 mutations for genomic surveillance. Bioinformatics 38 (17), pp. 4223 - 4225 (2022)

Jowett, G. M.; Read, E.; Roberts, L. B.; Coman, D.; Vilà González, M.; Zabinski, T.; Niazi, U.; Reis, R.; Trieu, T.-J.; Danovi, D. et al.; Gentleman, E.; Vallier, L.; Curtis, M. A.; Lord , G. M.; Neves, J. F.: Organoids capture tissue-specific innate lymphoid cell development in mice and humans. Cell Reports 40 (9), Article 111281 (2022)

Aznaourova, M.; Schmerer, N.; Janga, H.; Zhang , Z.; Pauck, K.; Bushe, J.; Volkers, S. M.; Wendisch, D.; Georg, P.; Ntini, E. et al.; Aillaud, M.; Gündisch, M.; Mack, E.; Skevaki , C.; Keller, C.; Bauer, C.; Bertrams, W.; Marsico, A.; Nist, A.; Stiewe, T.; Gruber, A. D.; Ruppert, C.; Li, Y.; Garn, H.; Sander, L. E.; Schmeck, B.; Schulte, L. N.: Single-cell RNA sequencing uncovers the nuclear decoy lincRNA PIRAT as a regulator of systemic monocyte immunity during COVID-19. Proceedings of the National Academy of Sciences of the United States of America 119 (36), e2120680119 (2022)

Khilji, S. K.; Goerdeler , F.; Frensemeier, K.; Warschkau, D.; Lühle, J.; Fandi, Z.; Schirmeister, F.; Chen, Z. A.; Turak, O.; Mallagaray, A. et al.; Boerno, S.; Timmermann, B.; Rappsilber, J.; Seeberger, P. H.; Moscovitz, O.: Generation of glycan-specific nanobodies. Cell Chemical Biology 29 (8), pp. 1353 - 1361 (2022)

Prasse, P.; Iversen, P.; Lienhard, M.; Thedinga, K.; Herwig, R.; Scheffer, T.: Pre-Training on In Vitro and Fine-Tuning on Patient-Derived Data Improves Deep Neural Networks for Anti-Cancer Drug-Sensitivity Prediction. Cancers / Molecular Diversity Preservation International (MDPI) 14 (16), 3950 (2022)

Boschann, F.; Cogulu, M. Ö.; Pehlivan, D.; Balachandran, S.; Vallecillo-Garcia, P.; Grochowski, C. M.; Hansmeier, N. R.; Coban Akdemir, Z. H.; Prada-Medina, C. A.; Aykut, A. et al.; Fischer-Zirnsak, B.; Badura, S.; Durmaz, B.; Ozkinay, F.; Hägerling, R.; Posey, J. E.; Stricker, S.; Gillessen-Kaesbach, G.; Spielmann, M.; Horn, D.; Brockmann, K.; Lupski, J. R.; Kornak, U.; Schmidt, J.: Biallelic variants in ADAMTS15 cause a novel form of distal arthrogryposis. GENETICS IN MEDICINE 24 (10), pp. 2187 - 2193 (2022)

Tomaz, R. A.; Zacharis, E. D.; Bachinger, F.; Wurmser, A. ....; Vallier, L.: Generation of functional hepatocytes by forward programming with nuclear receptors. eLife 11, Article e71591 (2022)

May, V.; Koch, L.; Fischer-Zirnsak, B.; Horn, D.; Gehle , P.; Kornak, U.; Beule, D.; Holtgrewe, M.: ClearCNV: CNV calling from NGS panel data in the presence of ambiguity and noise. Bioinformatics 38, pp. 3871 - 3876 (2022)

Berghöfer, J.; Khaveh, N.; Mundlos, S.; Metzger, J.: Simultaneous testing of rule- and model-based approaches for runs of homozygosity detection opens up a window into genomic footprints of selection in pigs. BMC Genomics 23, 564 (2022)

Wilder , A. P.; Dudchenko , O.; Curry , C.; Korody , M.; Turbek , S. P.; Daly, M.; Misuraca , A.; Wang, G.; Khan , R.; Weisz, D. et al.; Fronczek, J.; Lieberman Aiden , E.; Houck , M. L.; Shier , D. M.; Ryder , O. A.; Steiner , C. C.: A Chromosome-Length Reference Genome for the Endangered Pacific Pocket Mouse Reveals Recent Inbreeding in a Historically Large Population. Genome Biology and Evolution 14 (8), evac122 (2022)