Publications of Stefan Boerno

Lienhard, M.; van den Beucken , T.; Timmermann, B.; Hochradel, M.; Boerno, S.; Caiment , F.; Vingron, M.; Herwig, R.: IsoTools: a flexible workflow for long-read transcriptome sequencing analysis. Bioinformatics, btad364 (2023)

Kotsaris, G.; Qazi, T. H.; Bucher, C. H.; Zahid, H.; Pöhle-Kronawitter, S.; Ugorets, V.; Jarassier, W.; Börno, S.; Timmermann, B.; Giesecke-Thiel, C. et al.; Economides, A. N.; Le Grand, F.; Vallecillo-García, P.; Knaus, P.; Geissler, S.; Stricker, S.: Odd skipped-related 1 controls the pro-regenerative response of fibro-adipogenic progenitors. npj Regenerative Medicine 8, 19 (2023)

Binsch, C.; Barbosa, D. M.; Hansen-Dille, G.; Hubert, M.; Hodge, S. M.; Kolasa, M.; Jeruschke, K.; Weiß, J.; Springer, C.; Gorressen, S. et al.; Fischer, J. W.; Lienhard, M.; Herwig, R.; Börno, S.; Timmermann, B.; Cremer, A. L.; Backes, H.; Chadt, A.; Al-Hasani, H.: Deletion of Tbc1d4/As160 abrogates cardiac glucose uptake and increases myocardial damage after ischemia/reperfusion. Cardiovascular Diabetology 22, 17 (2023)

Verheijen, M.; Sarkans, U.; Wolski, W.; Jennen, D.; Caiment , F.; Kleinjans, J.; HeCaToS , C.; Barel, G.; Boerno, S.; Herwig, R. et al.; Lienhard, M.; Timmermann, B. e. a.: Multi-omics HeCaToS dataset of repeated dose toxicity for cardiotoxic & hepatotoxic compounds. Scientific Data 9, 699 (2022)

Khilji, S. K.; Goerdeler , F.; Frensemeier, K.; Warschkau, D.; Lühle, J.; Fandi, Z.; Schirmeister, F.; Chen, Z. A.; Turak, O.; Mallagaray, A. et al.; Boerno, S.; Timmermann, B.; Rappsilber, J.; Seeberger, P. H.; Moscovitz, O.: Generation of glycan-specific nanobodies. Cell Chemical Biology 29 (8), pp. 1353 - 1361 (2022)

Koutsoumparis, A.; Welp, L.; Wulf, A.; Urlaub, H.; Meierhofer, D.; Börno, S.; Timmermann, B.; Busack, I.; Bringmann, H.: Sleep neuron depolarization promotes protective gene expression changes and FOXO activation. Current Biology 32 (10), pp. 2248 - 2262 (2022)

Pei, Y.; Forstmeier, W.; Ruiz-Ruano, F. J.; Mueller, J. C.; Cabrero, J.; Camacho, J. P. M.; Alché, J. D.; Franke, A.; Hoeppner, M.; Börno, S. et al.; Gessara, I.; Hertel, M.; Teltscher, K.; Knief, U.; Suh, A.; Kempenaers, B.: Occasional paternal inheritance of the germline-restricted chromosome in songbirds. Proceedings of the National Academy of Sciences of the United States of America 119 (4), e2103960119 (2022)

Jax, E.; Mueller, I.; Börno, S.; Borlinghaus, H.; Eriksson, G.; Fricke, E.; Timmermann, B.; Pendl, H.; Fiedler, W.; Klein, K. et al.; Schreiber, F.; Wikelski, M.; Magor, K. E.; Kraus, R. H. S.: Health monitoring in birds using bio‑loggers and whole blood transcriptomics. Scientific Reports 11, 10815 (2021)

Kuhl, H.; Frankl-Vilches, C.; Bakker, A.; Mayr, G.; Nikolaus, G.; Boerno, S. T.; Klages, S.; Timmermann, B.; Gahr, M.: An unbiased molecular approach using 3’-UTRs resolves the avian family-level tree of life. Molecular Biology and Evolution 38 (1), pp. 108 - 127 (2021)

Wei, X.; Franke, J.; Ost, M.; Wardelmann, K.; Börno, S.; Timmermann, B.; Meierhofer, D.; Kleinridders, A.; Klaus, S.; Stricker, S.: Cell autonomous requirement of neurofibromin (Nf1) for postnatal muscle hypertrophic growth and metabolic homeostasis. Journal of Cachexia, Sarcopenia and Muscle 2020, 12632 (2020)

Selevsek, N.; Caiment, F.; Nudischer, R.; Gmuender, H.; Agarkova, I.; Atkinson, F. L.; Bachmann, I.; Baier, V.; Barel, G.; Bauer, C. et al.; Boerno, S.; Bosc, N.; Clayton, O.; Cordes, H.; Deeb, S.; Gotta, S.; Guye, P.; Hersey, A.; Hunter, F. M. I.; Kunz, L.; Lewalle, A.; Lienhard, M.; Merken, J.; Minguet, J.; Oliveira, B.; Pluess, C.; Sarkans, U.; Schrooders, Y.; Schuchhardt, J.; Smit, I.; Thiel, C.; Timmermann, B.; Verheijen, M.; Wittenberger, T.; Wolski, W.; Zerck, A.; Heymans, S.; Kuepfer, L.; Roth, A.; Schlapbach, R.; Niederer, S.; Herwig, R.; Kleinjans, J.: Network integration and modelling of dynamic drug responses at multi-omics levels. Communications Biology 3, 573 (2020)

Espindola-Hernandez, P.; Mueller, J. C.; Carrete, M.; Boerno, S.; Kempenaers, B.: Genomic evidence for sensorial adaptations to a nocturnal predatory lifestyle in owls. Genome Biology and Evolution 12 (10), pp. 1895 - 1908 (2020)

Mueller, J. C.; Carrete, M.; Boerno, S.; Kuhl, H.; Tella, J. L.; Kempenaers, B.: Genes acting in synapses and neuron projections are early targets of selection during urban colonization. Molecular Ecology, 15451 (2020)

Bratovič, M.; Fonfara, I.; Chylinski, K.; Gálvez, E. J. C.; Sullivan, T. J.; Boerno, S.; Timmermann, B.; Boettcher, M.; Charpentier, E.: Bridge helix arginines play a critical role in Cas9 sensitivity to mismatches. Nature Chemical Biology 16, pp. 587 - 595 (2020)

Kupke, S. Y.; Ly, L.-H.; Börno, S. T.; Ruff, A.; Timmermann, B.; Vingron, M.; Haas, S.: Single-Cell Analysis Uncovers a Vast Diversity in Intracellular Viral Defective Interfering RNA Content Affecting the Large Cell-to-Cell Heterogeneity in Influenza A Virus Replication. Viruses 12 (1), pii: E71 (2020)

Fattahi, Z.; Beheshtian, M.; Mohseni, M.; Poustchi, H.; Sellars, E.; Nezhadi, S. H.; Amini, A.; Arzhangi, S.; Jalalvand, K.; Jamali, P. et al.; Mohammadi, Z.; Davarnia, B.; Nikuei, P.; Oladnabi, M.; Mohammadzadeh, A.; Zohrehvand, E.; Nejatizadeh, A.; Shekari, M.; Bagherzadeh, M.; Shamsi‐Gooshki, E.; Börno, S.; Timmermann, B.; Haghdoost, A.; Najafipour, R.; Khorram Khorshid, H. R.; Kahrizi, K.; Malekzadeh, R.; Akbari, M. R.; Najmabadi, H.: Iranome: A catalogue of genomic variations in the Iranian population. Human Mutation 2019, pp. 1 - 17 (2019)

Gossmann, T. I.; Shanmugasundram, A.; Börno, S.; Duvaux, L.; Lemaire, C.; Kuhl, H.; Klages, S.; Roberts, L. D.; Schade, S.; Gostner, J. M. et al.; Hildebrand, F.; Vowinckel, J.; Bichet, C.; Mülleder, M.; Calvani, E.; Zelezniak, A.; Griffin, J. L.; Bork, P.; Allaine, D.; Cohas, A.; Welch, J. J.; Timmermann, B.; Ralser, M.: Ice-age climate adaptations trap the Alpine marmot in a ,state of low genetic diversity. Current Biology 29 (10), pp. 1712 - 1720 (2019)

Verheijen, M.; Lienhard, M.; Schrooders, Y.; Clayton, O.; Nudischer, R.; Boerno, S. T.; Timmermann, B.; Selevsek, N.; Schlapbach, R.; Gmuender, H. et al.; Gotta, S.; Geraedts, J.; Herwig, R.; Kleinjans, J.; Caiment, F.: DMSO induces drastic changes in human cellular processes and epigenetic landscape in vitro. Scientific Reports 9 (9), 4641 (2019)

Adachi, K.; Kopp, W.; Wu, G.; Heising, S.; Greber, B.; Stehling, M.; Araúzo-Bravo, M. J.; Boerno, S. T.; Timmermann, B.; Vingron, M. et al.; Schöler, H. R.: Esrrb Unlocks Silenced Enhancers for Reprogramming to Naive Pluripotency - Correction. Cell Stem Cell 23 (6), pp. 900 - 904 (2018)

Verheijen, M. C. T.; Schrooders, Y.; Nudischer, R.; Börno, S. T.; Schlapbach, R.; Gotta, S.; Kleinjans, J. C. S.; Lienhard, M.; Clayton, O.; Timmermann, B. et al.; Selevsek, N.; Gmuender, H.; Herwig, R.; Caiment, F.: DMSO-induced drastic changes in cellular processes and epigenetic landscape in vitro. TOXICOLOGY LETTERS 2018, 295:S215 (2018)