Publications of Martin Vingron

Journal Article (204)

Journal Article
Krause, A.; Haas, S. A.; Coward, E.; Vingron, M.: SYSTERS, GeneNest, SpliceNest: exploring sequence space from genome to protein. Nucleic Acids Research 30 (1), pp. 299 - 300 (2002)
Journal Article
Müller, T.; Spang, R.; Vingron, M.: Estimating Amino Acid Substitution Models: A Comparison of Dayhoff's Estimator, the Resolvent Approach and a Maximum Likelihood Method. Molecular Biology and Evolution 19 (1), pp. 8 - 13 (2002)
Journal Article
Meinel, T.; Krause, A.; Luz, H.; Vingron, M.; Staub, E.: The SYSTERS Protein Family Database in 2005.
Journal Article
Schmid, M.; Davison, T. S.; Henz, S. R.; Pape, U. J.; Demar, M.; Vingron, M.; Schoelkopf, B.; Weigel, D.; Lohmann, J. U.: A gene expression map of Arabidopsis development.

Book Chapter (11)

Book Chapter
Schulz, M. H.; Köhler, S.; Bauer, S.; Vingron, M.; Robinson, P. N.: Exact Score Distribution Computation for Similarity Searches in Ontologies. In: Algorithms in Bioinformatics, pp. 298 - 309 (Eds. Salzberg, S. L.; Warnow, T.). Springer, New York [et al] (2009)
Book Chapter
Schulz, M. H.; Weese, D.; Rausch, T.; Döring, A.; Reinert, K.; Vingron, M.: Fast and adaptive variable order Markov chain construction. In: Algorithms in Bioinformatics, pp. 306 - 317 (Eds. Crandall, K. A.; Lagergren, J.). Springer, Berlin / Heidelberg (2008)
Book Chapter
Coulson, R.; Manke, T.; Palin, K.; Roider, H.; Sand, O.; van Helden, J.; Ukkonen, E.; Vingron, M.; Brazma, A.: From gene expression profiling to gene regulation. In: Modern Genome Annotation, pp. 91 - 102 (Eds. Frishman, D.; Valencia, A.). Springer, Wien (2008)
Book Chapter
Manke, T.; Roider, H. G.; Vingron, M.: A biophysical approach to large-scale protein-DNA binding data. In: Modern Genome Annotation: The Biosapiens Network, pp. 91 - 102 (Eds. Frishman, D.; Valencia, A.). Springer, New York (2008)
Book Chapter
Klau, G. W.; Rahmann, S.; Schliep, A.; Vingron, M.; Reinert, K.: Integer linear programming approaches for non-unique probe selection. In: Discrete Mathematics and Data Mining II - DM & DM II, pp. 840 - 856 (Eds. Anthony, M.H.G.; Boros, E.; Hammer, P.L.; Kogan, A.). Elsevier, Amsterdam et al (2007)
Book Chapter
Behzadi, B.; Vingron, M.: Reconstructing Domain Compositions of Ancestral Multi-Domain Proteins. In: Comparative Genomics, pp. 1 - 10. Springer, Berlin/Heidelberg (2006)
Book Chapter
Behzadi, B.; Vingron, M.: An Improved Algorithm for the Macro-evolutionary Phylogeny Problem. In: Combinatorial Pattern Matching, pp. 177 - 187. Springer, Berlin/Heidelberg (2006)
Book Chapter
Steinhoff, C.; Vingron, M.: Normalization strategies for microarray data analysis. In: DNA Microarrays, pp. 215 - 223 (Ed. Nuber, U.). Garland Science, Great Britain (2005)
Book Chapter
Huber, W.; Heydebreck, A. v.; Vingron, M.: Analysis of microarray gene expression data. In: Handbook of Statistical Genetics, p. / - / (Eds. Balding, D. J.; Bishop, M.; Cannings, C.). John Wiley & Sons, Ltd, Chichester [et al] (2003)
Book Chapter
Fellenberg, K.; Vingron, M.; Hauser, N. C.; Hoheisel, J. D.: Correspondence analysis with microarray data. In: Perspectives in gene expression, pp. 307 - 343 (Ed. Appasani, K.). Eaton Publishing, Westborough, MA (2003)
Book Chapter
Brazma, A.; Sarkans, U.; Robinson, A.; Jaak, V.; Vingron, M.; Hoheisel, J.; Fellenberg, K.: Microarray Data Representation, Annotation and Storage. In: Chip Technology, pp. 113 - 139 (Ed. Hoheisel, J.). Springer-Verlag, Heidelberg (2002)

Proceedings (1)

Gaussian mixture density estimation applied to microarray data (Lecture Notes in Computer Sciences, 2810). 5th International Symposium on Intelligent Data Analysis, IDA 2003, Berlin, Germany, August 28, 2003 - August 30, 2003. Springer, Berlin [et al] (2003), 624 pp pp.

Conference Paper (15)

Conference Paper
Schöpflin, R.; Andrey, G.; Heinrich, V.; Franke, M.; Ibrahim, D.; Paliou, C.; Mundlos, S.; Vingron, M.: Identification of potential regulatory elements in Capture-C interaction profiles. In: Genome Regulation in 3D, Vol. 2015. Genome Regulation in 3D, Rehovot, Israel, June 28, 2015 - June 30, 2015. Weizmann Institute, Rehovot, Israel (2015)
Conference Paper
Schöpflin, R.; Vingron, M.: Identification of cis-regulatory elements from chromosome conformation capture data. In: 19th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2015). 19th Annual International Conference on Research in Computational Molecular Biology (RECOMB 2015), Warsaw, Poland, April 12, 2015 - April 15, 2015. (2015)
Conference Paper
Pape, U. J.; Vingron, M.: Statistics for Co-Occurrence of DNA Motifs. 2008 International Workshop on Applied Probability, Université de Technologie de Compiègne, France, July 07, 2008 - July 10, 2008. (2008)
Conference Paper
Pape, U.; Vingron, M.: Statistical detection of co-operative transcription factors with similarity adjustment. In: Proceedings of the German Conference on Bioinformatics, GCB, pp. 96 - 105 (Ed. Andreas Beyer, M. S.). German Conference on Bioinformatics (GCB), Dresden, September 09, 2008 - September 12, 2008. GI (2008)
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