Publications of Stefan Haas

Emde, A. K.; Schulz, M. H.; Weese, D.; Sun, R.; Vingron, M.; Kalscheuer, V. M.; Haas, S.; Reinert, K.: Detecting genomic indel variants with exact breakpoints in single- and paired-end sequencing data using SplazerS. Bioinformatics 28 (5), pp. 619 - 27 (2012)

Sun, R.; Love, M.; Zemojtel, T.; Emde, A.-K.; Chung, H.-R.; Vingron, M.; Haas, S.: Breakpointer: using local mapping artifacts to support sequence breakpoint discovery from single-end reads. Bioinformatics 28 (7), pp. 1024 - 1025 (2012)

Lin, S.; Haas, S.; Zemojtel, T.; Xiao, P.; Vingron, M.; Li, R.: Genome-wide comparison of cyanobacterial transposable elements, potential genetic diversity indicators. Gene 473 (2), pp. 139 - 49 (2011)

Love, M. I.; Mysickova, A.; Sun, R.; Kalscheuer, V. M.; Vingron, M.; Haas, S. A.: Modeling read counts for CNV detection in exome sequencing data. Statistical Applications in Genetics and Molecular Biology 10 (1) (2011)

Najmabadi, H.; Hu, H.; Garshasbi, M.; Zemojtel, T.; Abedini, S. S.; Chen, W.; Hosseini, M.; Behjati, F.; Haas, S.; Jamali, P. et al.; Zecha, A.; Mohseni, M.; Puttmann, L.; Vahid, L. N.; Jensen, C.; Moheb, L. A.; Bienek, M.; Larti, F.; Mueller, I.; Weissmann, R.; Darvish, H.; Wrogemann, K.; Hadavi, V.; Lipkowitz, B.; Esmaeeli-Nieh, S.; Wieczorek, D.; Kariminejad, R.; Firouzabadi, S. G.; Cohen, M.; Fattahi, Z.; Rost, I.; Mojahedi, F.; Hertzberg, C.; Dehghan, A.; Rajab, A.; Banavandi, M. J.; Hoffer, J.; Falah, M.; Musante, L.; Kalscheuer, V.; Ullmann, R.; Kuss, A. W.; Tzschach, A.; Kahrizi, K.; Ropers, H. H.: Deep sequencing reveals 50 novel genes for recessive cognitive disorders. Nature 478 (7367), pp. 57 - 63 (2011)

Cheng, X.; Guerasimova, A.; Manke, T.; Rosenstiel, P.; Haas, S.; Warnatz, H. J.; Querfurth, R.; Nietfeld, W.; Vanhecke, D.; Lehrach, H. et al.; Yaspo, M. L.; Janitz, M.: Screening of human gene promoter activities using transfected-cell arrays. Gene 450 (1-2), pp. 48 - 54 (2010)

Baek, Y.-S.; Haas, S.; Hackstein, H.; Bein, G.; Hernandez-Santana, M.; Lehrach, H.; Sauer, S.; Seitz, H.: Identification of novel transcriptional regulators involved in macrophage differentiation and activation in U937 cells. BMC Immunology 10, p. 18 - 18 (2009)

Sultan, M.; Schulz, M. H.; Hugues, R.; Magen, A.; Klingenhoff, A.; Scherf, M.; Seifert, M.; Borodina, T.; Soldatov, A.; i Parkhomchuk, D. et al.; Schmidt, D.; O'Keeffe, S.; Haas, S.; Vingron, M.; Lehrach, H.; Yaspo, M.-L.: A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome. Science 321 (5891), pp. 956 - 960 (2008)

Hain, T.; Hossain, H.; Chatterjee, S. S.; Machata, S.; Volk, U.; Wagner, S.; Brors, B.; Haas, S.; Kuenne, C. T.; Billion, A. et al.; Otten, S.; Pane-Farre, J.; Engelmann, S.; Chakraborty, T.: Temporal transcriptomic analysis of the Listeria monocytogenes EGD-e sigmaB regulon. BMC Microbiology 8 (20) (2008)

Oberthuer, A.; Berthold, F.; Warnat, P.; Hero, B.; Kahlert, Y.; Spitz, R.; Ernestus, K.; König, R.; Haas, S.; Eils, R. et al.; Schwab, M.; Brors, B.; Westermann, F.; Fischer, M.: Gene-expression based classification of neuroblastoma patients using a customized oligonucleotide-microarray outperforms current clinical risk stratification. Journal of Clinical Oncology: Jco ; Official Journal of the American Society of Clinical Oncology 24 (31), pp. 5070 - 5078 (2006)

Xue, Y. T.; Haas, S.; Brino, L.; Gusnanto, A.; Riemers, M.; Talibi, D.; Vingron, M.; Ekwall, K.; Wright, A. P. H.: A DNA microarray for fission yeast: minimal changes in global gene expression after temperature shift. Yeast 21 (1), pp. 25 - 39 (2004)

Kalscheuer, V. M.; Freude, K.; Musante, L.; Jensen, L. R.; Yntema, H. G.; Gecz, J.; Sefiani, A.; Hoffmann, K.; Moser, B.; Haas, S. et al.; Gurok, U.; Haesler, S.; Aranda, B.; Nshedjan, A.; Tzschach, A.; Hartmann, N.; Roloff, T.-C.; Shoichet, S.; Hagens, O.; Tao, J.; van Bokhoven, H.; Turner, G.; Chelly, J.; Moraine, C.; Fryns, J.-P.; Nuber, U.; Hoeltzenbein, M.; Scharff, C.; Scherthan, H.; Lenzner, S.; Hamel, B. C. J.; Schweiger, S.; Ropers, H.-H.: Mutations in the polyglutamine binding protein 1 gene cause X-linked mental retardation. Nature Genetics 35 (4), pp. 313 - 315 (2003)

Ringel, A.; Szabo, Q.; Chiariello, A. M.; Chudzik, K.; Schöpflin, R.; Rothe, P.; Mattei, A. L.; Zehnder, T.; Harnett, D.; Laupert, V. et al.; Bianco, S.; Hetzel, S.; Phan, M.; Schindler, M.; Ibrahim, D. M.; Paliou, C.; Esposito, A.; Prada-Medina, C. A.; Haas, S.; Giere, P.; Vingron, M.; Wittler, L.; Meissner, A.; Nicodemi, M.; Cavalli, G.; Bantignies, F.; Mundlos, S.; Robson, M.: Promoter repression and 3D-restructuring resolves divergent developmental gene expression in TADs. (2021)