Publications of M. Vingron

Nicodéme, P.; Doerks, D.; Vingron, M.: Proteome analysis based on motif statistics. Proceedings of the European Conference on Computational Biology (ECCB 2002), pp. S161 - S171 (2002)

Huber, W.; von Heydebreck, A.; Sültmann, H.; Poustka, A.; Vingron, M.: Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, pp. S96 - S104 (2002)

Dieterich, C.; Cusack, B.; Wang, H.; Rateitschak, K.; Krause, A.; Vingron, M.: Annotating regulatory DNA based on man-mouse genomic comparison. Proceedings of the European Conference on Computational Biology (ECCB 2002), pp. S84 - S90 (2002)

Scheideler, M.; Schlaich, N. L.; Fellenberg, K.; Beissbarth, T.; Hauser, N. C.; Vingron, M.; Slusarenko, A. J.; Hoheisel, J. D.: Monitoring the Switch from Housekeeping to Pathogen Defense Metabolism in Arabidopsis thaliana Using cDNA Arrays. Journal of Biological Chemistry 277 (12), pp. 10555 - 10561 (2002)

Beckers, J.; Hoheisel, J.; Mewes, W.; Vingron, M.; Hrabé de Angelis, M.: Molecular Phenotyping of Mouse Mutant Resources by RNA Expression Profiling. Current Genomics 3 (3), pp. 121 - 129 (2002)

Fellenberg, K.; Hauser, N. C.; Brors, B.; Hoheisel, J. D.; Vingron, M.: Microarray data warehouse allowing for inclusion of experiment annotations in statistical analysis. Bioinformatics 18 (3), pp. 423 - 433 (2002)

Schmidt, H. A.; Strimmer, K.; Vingron, M.; von Haeseler, A.: TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18 (3), pp. 502 - 504 (2002)

Coward, E.; Haas, S. A.; Vingron, M.: SpliceNest: visualizing gene structure and alternative splicing based on EST clusters. Trends in Genetics 18 (1), pp. 53 - 55 (2002)

Krause, A.; Haas, S. A.; Coward, E.; Vingron, M.: SYSTERS, GeneNest, SpliceNest: exploring sequence space from genome to protein. Nucleic Acids Research 30 (1), pp. 299 - 300 (2002)

Müller, T.; Spang, R.; Vingron, M.: Estimating Amino Acid Substitution Models: A Comparison of Dayhoff's Estimator, the Resolvent Approach and a Maximum Likelihood Method. Molecular Biology and Evolution 19 (1), pp. 8 - 13 (2002)

Meinel, T.; Krause, A.; Luz, H.; Vingron, M.; Staub, E.: The SYSTERS Protein Family Database in 2005.

Schmid, M.; Davison, T. S.; Henz, S. R.; Pape, U. J.; Demar, M.; Vingron, M.; Schoelkopf, B.; Weigel, D.; Lohmann, J. U.: A gene expression map of Arabidopsis development.

Schulz, M. H.; Köhler, S.; Bauer, S.; Vingron, M.; Robinson, P. N.: Exact Score Distribution Computation for Similarity Searches in Ontologies. In: Algorithms in Bioinformatics, pp. 298 - 309 (Eds. Salzberg, S. L.; Warnow, T.). Springer, New York [et al] (2009)

Schulz, M. H.; Weese, D.; Rausch, T.; Döring, A.; Reinert, K.; Vingron, M.: Fast and adaptive variable order Markov chain construction. In: Algorithms in Bioinformatics, pp. 306 - 317 (Eds. Crandall, K. A.; Lagergren, J.). Springer, Berlin / Heidelberg (2008)

Coulson, R.; Manke, T.; Palin, K.; Roider, H.; Sand, O.; van Helden, J.; Ukkonen, E.; Vingron, M.; Brazma, A.: From gene expression profiling to gene regulation. In: Modern Genome Annotation, pp. 91 - 102 (Eds. Frishman, D.; Valencia, A.). Springer, Wien (2008)

Manke, T.; Roider, H. G.; Vingron, M.: A biophysical approach to large-scale protein-DNA binding data. In: Modern Genome Annotation: The Biosapiens Network, pp. 91 - 102 (Eds. Frishman, D.; Valencia, A.). Springer, New York (2008)

Klau, G. W.; Rahmann, S.; Schliep, A.; Vingron, M.; Reinert, K.: Integer linear programming approaches for non-unique probe selection. In: Discrete Mathematics and Data Mining II - DM & DM II, pp. 840 - 856 (Eds. Anthony, M.H.G.; Boros, E.; Hammer, P.L.; Kogan, A.). Elsevier, Amsterdam et al (2007)

Behzadi, B.; Vingron, M.: Reconstructing Domain Compositions of Ancestral Multi-Domain Proteins. In: Comparative Genomics, pp. 1 - 10. Springer, Berlin/Heidelberg (2006)

Behzadi, B.; Vingron, M.: An Improved Algorithm for the Macro-evolutionary Phylogeny Problem. In: Combinatorial Pattern Matching, pp. 177 - 187. Springer, Berlin/Heidelberg (2006)

Steinhoff, C.; Vingron, M.: Normalization strategies for microarray data analysis. In: DNA Microarrays, pp. 215 - 223 (Ed. Nuber, U.). Garland Science, Great Britain (2005)