Publications of Peter F. Arndt

Abdullaev, E. T.; Haridoss, D. A.; Arndt, P. F.: Reconstruction of Segmental Duplication Rates and Associated Genomic Features by Network Analysis. Genome Biology and Evolution 17 (3), Article evaf011 (2025)

Rosebrock, D.; Vingron, M.; Arndt, P. F.: Modeling gene expression cascades during cell state transitions. iScience 27 (4), Article 109386 (2024)

Sheinman, M.; Arndt, P. F.; Massip, F.: Modeling the mosaic structure of bacterial genomes to infer their evolutionary history. PNAS 121 (13), Article e2313367121 (2024)

Rosebrock, D.; Arora, S.; Mutukula, N.; Volkman, R.; Gralinska, E.; Balaskas, A.; Aragonés Hernández, A.; Buschow, R.; Brändl, B.; Müller, F.-J. et al.; Arndt, P. F.; Vingron, M.; Elkabetz, Y.: Enhanced cortical neural stem cell identity through short SMAD and WNT inhibition in human cerebral organoids facilitates emergence of outer radial glial cells. Nature Cell Biology 24, pp. 981 - 995 (2022)

Abdullaev, E.; Umarova, I. R.; Arndt, P. F.: Modelling segmental duplications in the human genome. BMC Genomics 22, 496 (2021)

Sheinman, M.; Arkhipova, K.; Arndt, P. F.; Dutilh, B. E. ..; Hermsen, R.; Massip, F.: Identical sequences found in distant genomes reveal frequent horizontal transfer across the bacterial domain. eLife 10, e62719 (2021)

Arndt, P. F.: Sequential and continuous time stick-breaking. Journal of Statistical Mechanics: Theory and Experiment 2019, 064003 (2019)

Smith, T. C. A.; Arndt, P. F.; Eyre-Walker, A.: Large scale variation in the rate of germ-line de novo mutation, base composition, divergence and diversity in humans. PLoS Genetics 14 (3), e1007254 (2018)

Kuruoglu, E. E.; Arndt, P. F.: The information capacity of the genetic code: Is the natural code optimal? Journal of Theoretical Biology 419, pp. 227 - 237 (2017)

Massip, F.; Sheinman, M.; Schbath, S.; Arndt, P.: Comparing the Statistical Fate of Paralogous and Orthologous Sequences. Genetics 204 (2), pp. 475 - 482 (2016)

Moorjani, P.; Amorim, C. E.; Arndt, P. F.; Przeworski, M.: Variation in the molecular clock of primates. Proceedings of the National Academy of Sciences of the United States of America 113 (38), pp. 10607 - 10612 (2016)

Sheinman, M.; Ramisch, A.; Massip, F.; Arndt, P. F.: Evolutionary dynamics of selfish DNA explains the abundance distribution of genomic subsequences. Scientific Reports 6, 30851 (2016)

Glémin, S.; Arndt, P. F.; Messer, P. W.; Petrov, D.; Galtier, N.; Duret, L.: Quantification of GC-biased gene conversion in the human genome. Genome Research 25 (8), pp. 1215 - 1228 (2015)

Francioli, L. C.; Polak, P. P.; Koren, A.; Menelaou, A.; Chun, S.; Renkens, I.; Genome of the Netherlands, C.; van Duijn, C. M.; Swertz, M.; Wijmenga, C. et al.; van Ommen, G.; Slagboom, P. E.; Boomsma, D. I.; Ye, K.; Guryev, V.; Arndt, P. F.; Kloosterman, W. P.; de Bakker, P. I.; Sunyaev, S. R.: Genome-wide patterns and properties of de novo mutations in humans. Nature Genetics 47 (7), pp. 822 - 826 (2015)

Sheinman, M.; Massip, F.; Arndt, P. F.: Statistical properties of pairwise distances between leaves on a random Yule tree. PLoS One 10 (3), e0120206 (2015)

Massip, F.; Sheinman, M.; Schbath, S.; Arndt, P. F.: How evolution of genomes is reflected in exact DNA sequence match statistics. Mol Biol Evol 32 (2), pp. 524 - 535 (2015)

Mugal, C. F.; Arndt, P. F.; Holm, L.; Ellegren, H.: Evolutionary consequences of DNA methylation on the GC content in vertebrate genomes. G3: Genes, Genomes, Genetics 5 (3), pp. 441 - 447 (2015)

Berglund, J.; Quilez, J.; Arndt, P. F.; Webster, M. T.: Germ line Methylation Patterns Determine the Distribution of Recombination Events in the Dog Genome. Genome biology and evolution 7 (2), pp. 522 - 530 (2014)

Almirantis, Y.; Arndt, P.; Li, W.; Provata, A.: Editorial: Complexity in genomes. Computational Biology and Chemistry 53, pp. 1 - 4 (2014)

Muino, J. M.; Kuruoglu, E. E.; Arndt, P. F.: Evidence of a cancer type-specific distribution for consecutive somatic mutation distances. Computational Biology and Chemistry 53, Pt A, pp. 79 - 83 (2014)