Publications
The following publications were published exclusively under the affiliation of the Max Planck Society. For publications by the principal investigator outside of the Max Planck Society, see the links on the lower left.
Journal Article (20)
Journal Article
7 (2), Article lqaf039 (2025)
TetRex: a novel algorithm for index-accelerated search of highly conserved motifs. NAR: genomics and bioinformatics
Journal Article
7 (1), Article lqaf025 (2025)
SeArcH schemes for Approximate stRing mAtching. NAR: genomics and bioinformatics
Journal Article
16 (1), Article 2298 (2025)
FIORA: Local neighborhood-based prediction of compound mass spectra from single fragmentation events. Nature Communications
Journal Article
34 (9), pp. 1355 - 1364 (2024)
Reconstructing extrachromosomal DNA structural heterogeneity from long-read sequencing data using Decoil. Genome Research
Journal Article
25 (1), Article 155 (2024)
Leaf: an ultrafast filter for population-scale long-read SV detection. Genome Biology: Biology for the Post-Genomic Era
Journal Article
40 (3), Article btae097 (2024)
Lambda3: homology search for protein, nucleotide, and bisulfite-converted sequences. Bioinformatics
Journal Article
40 (2), Article btae045 (2024)
A simple refined DNA minimizer operator enables 2-fold faster computation. Bioinformatics
Journal Article
24 (1), 131 (2023)
Hierarchical Interleaved Bloom Filter: enabling ultrafast, approximate sequence queries. Genome Biology: Biology for the Post-Genomic Era
Journal Article
24 (2), bbad071 (2023)
Linear: a framework to enable existing software to resolve structural variants in long reads with flexible and efficient alignment-free statistical models. Briefings in Bioinformatics
Journal Article
28 (17), pp. 4100 - 4108 (2022)
Needle: a fast and space-efficient prefilter for estimating the quantification of very large collections of expression experiments. Bioinformatics
Journal Article
19 (4), pp. 429 - 440 (2022)
Critical Assessment of Metagenome Interpretation: the second round of challenges. Nature Methods
Journal Article
23, 18 (2022)
LaRA 2: parallel and vectorized program for sequence–structure alignment of RNA sequences. BMC Bioinformatics
Journal Article
37 (21), pp. 3934 - 3935 (2021)
RLM: Fast and simplified extraction of Read-Level Methylation metrics from bisulfite sequencing data. Bioinformatics
Journal Article
24 (7), 102782 (2021)
Raptor: A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences. iScience
Journal Article
36 (suppl.1), pp. i12 - i20 (2020)
ganon: precise metagenomics classification against large and up-to-date sets of reference sequences. Bioinformatics
Journal Article
16 (5), e1007843 (2020)
Ranbow: A fast and accurate method for polyploid haplotype reconstruction. PLOS Computational Biology
Journal Article
11, 11:636 (2020)
Rapid and Culture Free Identification of Francisella in Hare Carcasses by High-Resolution Tandem Mass Spectrometry Proteotyping. Frontiers in Microbiology
Journal Article
36 (12), pp. 3687 - 3692 (2020)
GenMap: Ultra-fast Computation of Genome Mappability. Bioinformatics
Journal Article
34 (17), pp. i766 - 1772 (2018)
DREAM-Yara: an exact read mapper for very large databases with short update time. Bioinformatics
Journal Article
261, pp. 157 - 168 (2017)
The SeqAn C++ template library for efficient sequence analysis: A resource for programmers. Journal of Biotechnology