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Heller, D.: Structural variant calling using third-generation sequencing data. Dissertation, xiii, 139 pp. (2021)

Moeinzadeh, M.: De novo and haplotype assembly of polyploid genomes. Dissertation, vii, 157 pp. (2019)

Ramisch, A.: Enhancer Prediction Based on Epigenomic Data. Dissertation, iv, 186 pp. (2019)

Pockrandt, C. M.: Approximate String Matching: Improving Data Structures and Algorithms. Dissertation, 175 pp. (2019)

Steiger, E.: Efficient Sparse-Group Bayesian Feature Selection for Gene Network Reconstruction. Dissertation, Freie Universität, Berlin (2018)

Huska, M. R.: Using machine learning to predict and better understand DNA methylation and genomic enhancers. Dissertation, viii, 143 pp., Freie Universität, Berlin (2018)

Helmuth, J.: Robust Normalization of Next Generation Sequencing Data. Dissertation, xii, 145 pp. (2017)

Kopp, W.: Statistical methods for motif hit enrichment in DNA sequences. Dissertation, 216 pp. (2017)

Heinrich, V.: Aspects of Quality Control for Next Generation Sequencing Data in Medical Genetics. Dissertation, vi, 137, XXVII pp pp., Freie Universität, Berlin (2017)

Hübner, P.: Association Plots – A Method to Detect Tissue-Specific Regulatory Patterns? Master (2024)

Kane, M.: Mathematical Modeling of High-Risk Viral Mutations. Master (2024)

Lopez Ruiz de Vargas, S.: Adding 3D chromatin structure information to enhancer- target prediction with CENTRE. Master (2024)

Raei, W. A.: Genotyping tandem repeats: Introducing Tandem Twister, a rapid and universal tool for long-read sequencing technologies. Master (2024)

Alavi, N.: An Unsupervised Learning Approach For Understanding Biases In Structural Variant Detection. Master (2022)

Sliwa, P.: Heuristic Approaches To Conditional Independence Test Using Partial Distance Correlation. Master (2020)

Huber, W.; von Heydebreck, A.; Vingron, M.: Error models for microarray intensities, (2004)

Schindler, M.; Feregrino, C.; Aldrovandi, S.; Lo, B.-W.; Monaco, A. A.; Ringel, A. R.; Morales, A.; Zehnder, T.; Behncke, R. Y.; Glaser, J. et al.; Barclay, A.; Andrey, G.; Kragesteen, B. K.; Hägerling, R.; Haas, S.; Vingron, M.; Ulitsky, I.; Marti-Renom, M.; Hechavarria, J.; Fasel, P.; Hiller, M.; Lupiáñez, D.; Mundlos, S.; Real, F. M.: Comparative single-cell analyses reveal evolutionary repurposing of a conserved gene program in bat wing development. bioRxiv: the preprint server for biology (2024)

Schwaemmle, T.; Noviello, G.; Kanata, E.; Froehlich, J. J.; Bothe, M.; Altay, A.; Scouarnec, J.; Feng, V.-Y.; Vingron, M.; Schulz, E. G.: Reporter CRISPR screens decipher cis- and trans-regulatory principles at the Xist locus. bioRxiv (2024)

Glaser, J.; Cova, G.; Fauler, B.; Prada-Medina, C. A.; Stanislas, V.; Phan, M. H. Q.; Schöpflin, R.; Aktas, Y.; Franke, M.; Andrey, G. et al.; Paliou, C.; Laupert, V.; Chan, W.-L.; Wittler, L.; Mielke, T.; Mundlos, S.: Enhancer adoption by an LTR retrotransposon generates viral-like particles causing developmental limb phenotypes. bioRxiv (2024)