Max Planck Publications of Meissner Lab

The following publications were published exclusively under the affiliation of the Max Planck Society. For publications by the principal investigator outside of the Max Planck Society, see the links on the lower left.

Journal Article (18)

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Zhang, Y.; Charlton, J.; Karnik, R.; Beerman, I.; Smith, Z. D.; Gu, H.; Boyle, P.; Mi , X.; Clement, K.; Pop, R. et al.; Gnirke, A.; Rossi, D. J.; Meissner, A.: Targets and genomic constraints of ectopic Dnmt3b expression. eLife 7, e40757 (2018)
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Ichida, J. K.; Staats, K. A.; Davis-Dusenbery, B. N.; Clement, K.; Galloway, K. E.; Babos, K. N.; Shi, Y.; Son, E. Y.; Kiskinis, E.; Atwater, N. et al.; Gu, H.; Gnirke, A.; Meissner, A.; Eggan, K.: Comparative genomic analysis of embryonic, lineage-converted and stem cell-derived motor neurons. Development 145 (22), pii: dev168617 (2018)
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Bernstein, E.; Meissner, A.; Ramalho-Santos, M.: Paying PIs from grants blocks talent and diversity. Nature 563 (7731), p. 325 (2018)
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Rajavelu, A.; Lungu, C.; Emperle, M.; Dukatz, M.; Bröhm, A.; Broche, J.; Hanelt, I.; Parsa, E.; Schiffers, S.; Karnik, R. et al.; Meissner, A.; Carell, T.; Rathert, P.; Jurkowska, R. Z.; Jeltsch, A.: Chromatin-dependent allosteric regulation of DNMT3A activity by MeCP2. Nucleic Acids Research (London) 46 (17), pp. 9044 - 9056 (2018)
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Cacchiarelli, D.; Qiu, X.; Srivatsan, S.; Manfredi, A.; Ziller, M.; Overbey, E.; Grimaldi, A.; Grimsby, J.; Pokharel, P.; Livak, K. J. et al.; Li, S.; Meissner, A.; Mikkelsen, T. S.; Rinn, J. L.; Trapnell, C.: Aligning Single-Cell Developmental and Reprogramming Trajectories Identifies Molecular Determinants of Myogenic Reprogramming Outcome. Cell Systems 7 (3), pp. 258 - 268 (2018)
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Di Stefano, B.; Ueda, M.; Sabri, S.; Brumbaugh, J.; Huebner, A. J.; Sahakyan, A.; Clement, K.; Clowers, K. J.; Erickson, A. R.; Shioda, K. et al.; Gygi, S. P.; Gu, H.; Shioda, T.; Meissner, A.; Takashima, Y.; Plath, K.; Hochedlinger, K.: Reduced MEK inhibition preserves genomic stability in naive human embryonic stem cells. Nature methods 15 (9), pp. 732 - 740 (2018)
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Schwarz, B. A.; Cetinbas, M.; Clement, K.; Walsh, R. M.; Cheloufi, S.; Gu, H.; Langkabel, J.; Kamiya, A.; Schorle, H.; Meissner, A. et al.; Sadreyev, R. I.; Hochedlinger, K.: Prospective Isolation of Poised iPSC Intermediates Reveals Principles of Cellular Reprogramming. Cell Stem Cell 23 (2), pp. 289 - 305 (2018)
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Nehme, R.; Zuccaro, E.; Ghosh, S. D.; Li, C.; Sherwood, J. L.; Pietilainen, O.; Barrett, L. E.; Limone, F.; Worringer, K. A.; Kommineni, S. et al.; Zang, Y.; Cacchiarelli, D.; Meissner, A.; Adolfsson, R.; Haggarty, S.; Madison, J.; Muller, M.; Arlotta, P.; Fu, Z.; Feng, G.; Eggan, K.: Combining NGN2 Programming with Developmental Patterning Generates Human Excitatory Neurons with NMDAR-Mediated Synaptic Transmission. Cell Reports 23 (8), pp. 2509 - 2523 (2018)
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Pasque, V.; Karnik, R.; Chronis, C.; Petrella, P.; Langerman, J.; Bonora, G.; Song, J.; Vanheer, L.; Dimashkie, A. S.; Meissner, A. et al.; Plath, K.: X Chromosome Dosage Influences DNA Methylation Dynamics during Reprogramming to Mouse iPSCs. Stem Cell Reports 10 (5), pp. 1537 - 1550 (2018)
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Shukla, S. A.; Bachireddy, P.; Schilling, B.; Galonska, C.; Zhan, Q.; Bango, C.; Langer, R.; Lee, P. C.; Gusenleitner, D.; Keskin, D. B. et al.; Babadi, M.; Mohammad, A.; Gnirke, A.; Clement, K.; Cartun, Z. J.; Van Allen, E. M.; Miao, D.; Huang, Y.; Snyder, A.; Merghoub, T.; Wolchok, J. D.; Garraway, L. A.; Meissner, A.; Weber, J. S.; Hacohen, N.; Neuberg, D.; Potts, P. R.; Murphy, G. F.; Lian, C. G.; Schadendorf, D.; Hodi, F. S.; Wu, C. J.: Cancer-Germline Antigen Expression Discriminates Clinical Outcome to CTLA-4 Blockade. Cell 173 (3), pp. 624 - 633 (2018)
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Cesana, M.; Guo, M. H.; Cacchiarelli, D.; Wahlster, L.; Barragan, J.; Doulatov, S.; Vo, L. T.; Salvatori, B.; Trapnell, C.; Clement, K. et al.; Cahan, P.; Tsanov, K. M.; Sousa, P. M.; Tazon-Vega, B.; Bolondi, A.; Giorgi, F. M.; Califano, A.; Rinn, J. L.; Meissner, A.; Hirschhorn, J. N.; Daley, G. Q.: A CLK3-HMGA2 Alternative Splicing Axis Impacts Human Hematopoietic Stem Cell Molecular Identity throughout Development. Cell Stem Cell 22 (4), pp. 575 - 588 (2018)
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Ziller, M. J.; Ortega, J. A.; Quinlan, K. A.; Santos, D. P.; Gu, H.; Martin , E. J.; Galonska, C.; Pop, R.; Maidl, S.; Pardo, A. D. et al.; Huang , M.; Meltzer, H. Y.; Gnirke , A.; Heckman, C. J.; Meissner, A.; Kiskinis, E.: Dissecting the Functional Consequences of De Novo DNA Methylation Dynamics in Human Motor Neuron Differentiation and Physiology. Cell Stem Cell 22, pp. 1 - 16 (2018)
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Charlton, J.; Downing, T. L.; Smith, Z. D.; Gu, H.; Clement, K.; Pop, R.; Akopian, V.; Klages, S.; Santos, D. P.; Tsankov, A. M. et al.; Timmermann, B.; Ziller, M. J.; Kiskinis, E.; Gnirke, A.; Meissner, A.: Global delay in nascent strand DNA methylation. Nature Structural and Molecular Biology 25 (4), pp. 327 - 332 (2018)
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Charlton, J.; Downing, T. L.; Smith, Z. D.; Gu, H.; Clement, K.; Pop, R.; Akopian, V.; Klages, S.; Santos, D. P.; Tsankov, A. M. et al.; Timmermann, B.; Ziller, M. J.; Kiskinis, E.; Gnirke, A.; Meissner, A.: Author Correction: Global delay in nascent strand DNA methylation. Nature Structural and Molecular Biology 25 (4), p. 355 (2018)
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Galonska, C.; Charlton, J.; Mattei, A. L.; Donaghey, J.; Clement, K.; Gu, H.; Mohammad, A. W.; Stamenova, E. K.; Cacchiarelli, D.; Klages, S. et al.; Timmermann, B.; Cantz, T.; Schöler, H. R.; Gnirke, A.; Ziller, M. J.; Meissner, A.: Genome-wide tracking of dCas9-methyltransferase footprints. Nature Communications 9, 597 (2018)
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Janssens, S.; Schotsaert, M.; Karnik, R.; Balasubramaniam, V.; Dejosez, M.; Meissner, A.; García-Sastre, A.; Zwaka, T. P.: Zika Virus Alters DNA Methylation of Neural Genes in an Organoid Model of the Developing Human Brain. mSystems 3 (1), e00219-17 (2018)
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Donaghey, J.; Thakurela, S.; Charlton, J.; Chen, J. S.; Smith, Z. D.; Gu, H.; Pop, R.; Clement, K.; Stamenova, E. K.; Karnik, R. et al.; Kelley, D. R.; Gifford, C. A.; Cacchiarelli, D.; Rinn, J. L.; Gnirke, A.; Ziller, M. J.; Meissner, A.: Genetic determinants and epigenetic effects of pioneer-factor occupancy. Nature Genetics 50 (2), pp. 250 - 258 (2018)
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Du, P.; Pirouz, M.; Choi, J.; Huebner, A. J.; Clement, K.; Meissner, A.; Hochedlinger, K.; Gregory, R. I.: An Intermediate Pluripotent State Controlled by MicroRNAs Is Required for the Naive-to-Primed Stem Cell Transition. Cell Stem Cell 22 (6), pp. 851 - 864 (2018)
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