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Journal Article (49)

1.

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Modic, M.; Grosch, M.; Rot, G.; Schirge, S.; Lepko, T.; Yamazaki, T.; Lee, F. C. Y.; Rusha, E.; Shaposhnikov, D.; Palo, M. et al.; Merl-Pham, J.; Cacchiarelli, D.; Rogelj, B.; Hauck, S. M.; von Mering, C.; Meissner, A.; Lickert, H.; Hirose, T.; Drukker, M.: Cross-Regulation between TDP-43 and Paraspeckles Promotes Pluripotency-Differentiation Transition. Molecular Cell 74, e13, pp. 1 - 15 (2019)
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Pastore, A.; Gaiti, F.; Lu, S. X.; Brand, R. M.; Kulm, S.; Chaligne, R.; Gu, H.; Huang, K. Y.; Stamenova, E. K.; Béguelin, W. et al.; Jiang, Y.; chulman, R. C.; Kim, K.-T.; Alonso, A.; Allan, J. N.; Furman, R. R.; Gnirke, A.; Wu, C. J.; Melnick, A. M.; Meissner, A.; Bernstein, B. E.; Abdel-Wahab, O.; Landau, D. A.: Corrupted coordination of epigenetic modifications leads to diverging chromatin states and transcriptional heterogeneity in CLL. Nature Communications 10 (1), 1874 (2019)
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Kraft, K.; Magg, A.; Heinrich, V.; Riemenschneider, C.; Schöpflin, R.; Markowski, J.; Ibrahim, D.; Acuna-Hidalgo, R.; Despang, A.; Andrey, G. et al.; Wittler, L.; Timmermann, B.; Vingron, M.; Mundlos, S.: Serial genomic inversions induce tissue-specific architectural stripes, gene misexpression and congenital malformations. Nature Cell Biology 21 (3), pp. 305 - 310 (2019)
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Krols, M.; Asselbergh, B.; De Rycke, R.; De Winter, V.; Seyer, A.; Müller, F.-J.; Kurth, I.; Bultynck, G.; Timmerman, V.; Janssens, S.: Sensory neuropathy-causing mutations in ATL3 affect ER-mitochondria contact sites and impair axonal mitochondrial distribution. Human Molecular Genetics 28 (4), pp. 615 - 627 (2019)
5.

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Hinohara, K.; Wu, H.-J.; Vigneau, S.; McDonald, T. O.; Igarashi, K. J.; Yamamoto, K. N.; Madsen, T.; Fassl, A.; Egri, S. B.; Papanastasiou, M. et al.; Ding, L.; Peluffo, G.; Cohen, O.; Kales, S. C.; Lal-Nag, M.; Rai, G.; Maloney, D. J.; Jadhav, A.; Simeonov, A.; Wagle, N.; Brown, M.; Meissner, A.; Sicinski, P.; Jaffe, J. D.; Jeselsohn, R.; Gimelbrant, A. A.; Michor, F.; Polyak, K.: KDM5 Histone Demethylase Activity Links Cellular Transcriptomic Heterogeneity to Therapeutic Resistance. Cancer Cell 35 (2), pp. 330 - 332 (2019)
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Klein, H.-U.; McCabe, C.; Gjoneska, E.; Sarah E. Sullivan, S. E.; Kaskow, B. J.; Tang, A.; Smith, R. V.; Xu, J.; Pfenning, A. R.; Bernstein, B. E. et al.; Meissner, A.; Schneider, J. A.; Mostafavi, S.; Tsai, L.-H.; Young-Pearse, T. L.; Bennett, D. A.; De Jager, P. L.: Epigenome-wide study uncovers large-scale changes in histone acetylation driven by tau pathology in aging and Alzheimer's human brains. Nature Neuroscience 22 (1), pp. 37 - 46 (2019)
7.

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Neureiter, A.; Brändl, B.; Hiber, M.; Tandon, R.; Müller, F.-J.; Steenpass, L.: Generation of an iPSC line of a patient with Angelman syndrome due to an imprinting defect. Stem Cell Research 33, pp. 20 - 24 (2018)
8.

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Tandon, R.; Brändl, B.; Baryshnikova, N.; Landshammer, A.; Steenpaß, L.; Keminer, O.; Pless, O.; Müller, F.-J.: Generation of two human isogenic iPSC lines from fetal dermal fibroblasts. Stem Cell Research 33, pp. 120 - 124 (2018)
9.

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Zhang, Y.; Charlton, J.; Karnik, R.; Beerman, I.; Smith, Z. D.; Gu, H.; Boyle, P.; Mi , X.; Clement, K.; Pop, R. et al.; Gnirke, A.; Rossi, D. J.; Meissner, A.: Targets and genomic constraints of ectopic Dnmt3b expression. eLife 7, e40757 (2018)
10.

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Ichida, J. K.; Staats, K. A.; Davis-Dusenbery, B. N.; Clement, K.; Galloway, K. E.; Babos, K. N.; Shi, Y.; Son, E. Y.; Kiskinis, E.; Atwater, N. et al.; Gu, H.; Gnirke, A.; Meissner, A.; Eggan, K.: Comparative genomic analysis of embryonic, lineage-converted and stem cell-derived motor neurons. Development 145 (22), pii: dev168617 (2018)
11.

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correspondence

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Bernstein, E.; Meissner, A.; Ramalho-Santos, M.: Paying PIs from grants blocks talent and diversity. Nature 563 (7731), p. 325 (2018)
12.

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Rajavelu, A.; Lungu, C.; Emperle, M.; Dukatz, M.; Bröhm, A.; Broche, J.; Hanelt, I.; Parsa, E.; Schiffers, S.; Karnik, R. et al.; Meissner, A.; Carell, T.; Rathert, P.; Jurkowska, R. Z.; Jeltsch, A.: Chromatin-dependent allosteric regulation of DNMT3A activity by MeCP2. Nucleic Acids Research (London) 46 (17), pp. 9044 - 9056 (2018)
13.

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Cacchiarelli, D.; Qiu, X.; Srivatsan, S.; Manfredi, A.; Ziller, M.; Overbey, E.; Grimaldi, A.; Grimsby, J.; Pokharel, P.; Livak, K. J. et al.; Li, S.; Meissner, A.; Mikkelsen, T. S.; Rinn, J. L.; Trapnell, C.: Aligning Single-Cell Developmental and Reprogramming Trajectories Identifies Molecular Determinants of Myogenic Reprogramming Outcome. Cell Systems 7 (3), e3, pp. 258 - 268 (2018)
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Di Stefano, B.; Ueda, M.; Sabri, S.; Brumbaugh, J.; Huebner, A. J.; Sahakyan, A.; Clement, K.; Clowers, K. J.; Erickson, A. R.; Shioda, K. et al.; Gygi, S. P.; Gu, H.; Shioda, T.; Meissner, A.; Takashima, Y.; Plath, K.; Hochedlinger, K.: Reduced MEK inhibition preserves genomic stability in naive human embryonic stem cells. Nature methods 15 (9), pp. 732 - 740 (2018)
15.

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Schwarz, B. A.; Cetinbas, M.; Clement, K.; Walsh, R. M.; Cheloufi, S.; Gu, H.; Langkabel, J.; Kamiya, A.; Schorle, H.; Meissner, A. et al.; Sadreyev, R. I.; Hochedlinger, K.: Prospective Isolation of Poised iPSC Intermediates Reveals Principles of Cellular Reprogramming. Cell Stem Cell 23 (2), e5, pp. 289 - 305 (2018)
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Sabari, B. R.; Dall’Agnese, A.; Boija, A.; Klein, I. A.; Coffey, E. L.; Shrinivas, K.; Abraham, B. J.; Hannett, N. M.; Zamudio, A. V.; Manteiga, J. C. et al.; Li, C. H.; Guo, Y. E.; Day, D. S.; Schuijers, J.; Vasile, E.; Malik, S.; Hnisz, D.; Lee, T. I.; Cisse, I. I.; Roeder, R. G.; Sharp, P. A.; Chakraborty, A. K.; Young, R. A.: Coactivator condensation at super-enhancers links phase separation and gene control. Science (6400), eaar3958 (2018)
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Percharde, M.; Lin, C.-J.; Yin, Y.; Guan, J.; Peixoto, G. A.; Bulut-Karslioglu, A.; Biechele, S.; Huang, B.; Shen, X.; Ramalho-Santos, M.: A LINE1-Nucleolin Partnership Regulates Early Development and ESC Identity. Cell 174 (2), e19, pp. 391 - 405 (2018)
18.

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Nehme, R.; Zuccaro, E.; Ghosh, S. D.; Li, C.; Sherwood, J. L.; Pietilainen, O.; Barrett, L. E.; Limone, F.; Worringer, K. A.; Kommineni, S. et al.; Zang, Y.; Cacchiarelli, D.; Meissner, A.; Adolfsson, R.; Haggarty, S.; Madison, J.; Muller, M.; Arlotta, P.; Fu, Z.; Feng, G.; Eggan, K.: Combining NGN2 Programming with Developmental Patterning Generates Human Excitatory Neurons with NMDAR-Mediated Synaptic Transmission. Cell Reports 23 (8), pp. 2509 - 2523 (2018)
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Allison, T. F.; Andrews, P. W.; Avior, Y.; Barbaric, I.; Benvenisty, N.; Bock, C.; Brehm, J.; Bruestle, O.; Damjanov, I.; Elefanty, A. et al.; Felkner, D.; Gokhale, P. J.; Halbritter, F.; Healy, L. E.; Hu, T. X.; Knowles, B. B.; Loring, J. F.; Ludwig, T. E.; Mayberry, R.; Micallef, S.; Mohamed, J. S.; Müller, F.-J.; Mummery, C. L.; Nakatsuji, N.; Ng, E. S.; Oh, S. K. W.; O'Shea, O.; Pera, M. F.; Reubinoff, B.; Robson, P.; Rossant, J.; Schuldt, B. M.; Solter, D.; Sourris, K.; Stacey, G.; Stanley, E. G.; Suemori, H.; Takahashi, K.; Yamanaka, S.: Assessment of Established Techniques to Determine Developmental and Malignant Potential of Human Pluripotent Stem Cells. Nature Communications 9 (1), 1925 (2018)
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Pasque, V.; Karnik, R.; Chronis, C.; Petrella, P.; Langerman, J.; Bonora, G.; Song, J.; Vanheer, L.; Dimashkie, A. S.; Meissner, A. et al.; Plath, K.: X Chromosome Dosage Influences DNA Methylation Dynamics during Reprogramming to Mouse iPSCs. Stem Cell Reports 10 (5), pp. 1537 - 1550 (2018)