Publications
Journal Article (98)
1.
Journal Article
83 (2), pp. 264 - 284 (2023)
JAK-STAT signaling in inflammatory breast cancer enables chemotherapy-resistant cell states. Cancer research: an official organ of the American Association for Cancer Research 2.
Journal Article
149 (20), dev200679 (2022)
Hypoxia induces a transcriptional early primitive streak signature in pluripotent cells enhancing spontaneous elongation and lineage representation in gastruloids. Development 3.
Journal Article
185 (20), e21, pp. 3689 - 3704 (2022)
Repression and 3D-restructuring resolves regulatory conflicts in evolutionarily rearranged genomes. Cell 4.
Journal Article
Molecular map of chronic lymphocytic leukemia and its impact on outcome. Nature Genetics (2022)
5.
Journal Article
14 (8), evac122 (2022)
A Chromosome-Length Reference Genome for the Endangered Pacific Pocket Mouse Reveals Recent Inbreeding in a Historically Large Population. Genome Biology and Evolution 6.
Journal Article
54, pp. 1238 - 1247 (2022)
Hijacking of transcriptional condensates by endogenous retroviruses. Nature Genetics 7.
Journal Article
25 (8), pp. 1049 - 1058 (2022)
Temporally divergent regulatory mechanisms govern neuronal diversification and maturation in the mouse and marmoset neocortex. Nature Neuroscience 8.
Journal Article
38 (7), pp. 676 - 707 (2022)
DNA methylation: a historical perspective. Trends in Genetics 9.
Journal Article
24, pp. 981 - 995 (2022)
Enhanced cortical neural stem cell identity through short SMAD and WNT inhibition in human cerebral organoids facilitates emergence of outer radial glial cells. Nature Cell Biology 10.
Journal Article
3 (6), pp. 768 - 782 (2022)
Acute lymphoblastic leukemia displays a distinct highly methylated genome. Nature Cancer 11.
Journal Article
41 (11), e108882 (2022)
Molecular crowding and RNA synergize to promote phase separation, microtubule interaction, and seeding of Tau condensates. The EMBO Journal 12.
Journal Article
25 (1), 103556 (2022)
Emergence and patterning dynamics of mouse-definitive endoderm. iScience 13.
Journal Article
37 (6), 109967 (2021)
Chromatin-state barriers enforce an irreversible mammalian cell fate decision. Cell Reports 14.
Journal Article
56 (21), e4, pp. 2995 - 3005 (2021)
Diverse epigenetic mechanisms maintain parental imprints within the embryonic and extraembryonic lineages. Developmental Cell 15.
Journal Article
37 (21), pp. 3934 - 3935 (2021)
RLM: Fast and simplified extraction of Read-Level Methylation metrics from bisulfite sequencing data. Bioinformatics 16.
Journal Article
16, pp. 4004 - 4030 (2021)
Smart-RRBS for single-cell methylome and transcriptome analysis. Nature Protocols 17.
Journal Article
35 (17-18), pp. 1209 - 1228 (2021)
Dissecting dual roles of MyoD during lineage conversion to mature myocytes and myogenic stem cells. Genes and Development 18.
Journal Article
Systematic profiling of DNMT3A variants reveals protein instability mediated by the DCAF8 E3 ubiquitin ligase adaptor. Cancer Discovery, CD-21-0560 (2021)
19.
Journal Article
12, 4897 (2021)
Topological isolation of developmental regulators in mammalian genomes. Nature Communications 20.
Journal Article
12, 4859 (2021)
Chd1 protects genome integrity at promoters to sustain hypertranscription in embryonic stem cells. Nature Communications