Publications

Glaser, S.; Kretzmer, H.; Kolassa, I. T.; Schlesner, M.; Fischer, A.; Fenske, I.; Siebert, R.; Ammerpohl , O.: Navigating Illumina DNA methylation data: biology versus technical artefacts. NAR: genomics and bioinformatics 6 (4), Article lqae181 (2024)

Hasenbein, T. P.; Hoelzl, S.; Smith, Z. D.; Gerhardinger, C.; Gonner, M. O. C.; Aguilar-Pimentel, A.; Amarie, O. V.; Becker, L.; Calzada-Wack, J.; Dragano, N. R. V. et al.; da Silva-Buttkus, P.; Garrett, L.; Hölter, S. M.; Kraiger, M.; Östereicher, M. A.; Rathkolb, B.; Sanz-Moreno, A.; Spielmann, N.; Wurst, W.; Gailus-Durner, V.; Fuchs, H.; Hrabě de Angelis, M.; Meissner, A.; Engelhardt, S.; Rinn, J. L.; Andergassen, D.: X-linked deletion of Crossfirre, Firre, and Dxz4 in vivo uncovers diverse phenotypes and combinatorial effects on autosomes. Nature Communications 15 (1), Article 10631 (2024)

Reissland, M.; Hartmann, O.; Tauch, S. e. a.; Diefenbacher, M. E.: USP10 drives cancer stemness and enables super-competitor signalling in colorectal cancer. Oncogene 43 (50), pp. 3645 - 3659 (2024)

Iyer, D. P.; Khoei , H. H.; van der Weijden, V. A.; Kagawa, H.; Pradhan, S. J.; Novatchkova, M.; McCarthy, A.; Rayon, T.; Simon, C. S.; Dunkel, I. et al.; Wamaitha, S. E.; Elder, K.; Snell , P.; Christie, L.; Schulz, E. G.; Niakan, K. K.; Rivron, N.; Bulut-Karslioglu, A.: mTOR activity paces human blastocyst stage developmental progression. Cell 187 (23), pp. 6566 - 6583 (2024)

Evers , M.; Brändl, B.; Rohrandt, C.; Kubelt-Kwamin, C.; Müller, F.-J.; Danso, D.; Maicher , A.; Wang, G.; Friedrichsen , S.; Kolkenbrock, S.: Rapid intraoperative amplicon sequencing of CNS tumor markers. Computational and Structural Biotechnology Journal 26, pp. 51 - 57 (2024)

Stötzel, M.; Cheng, C.-Y.; Ilik, I. A.; Sampath Kumar, A.; Akbari-Omgba, P.; van der Weijden, V. A.; Zhang, Y.; Vingron, M.; Meissner, A.; Aktas, T. et al.; Kretzmer, H.; Bulut-Karslioglu, A.: TET activity safeguards pluripotency throughout embryonic dormancy. Nature Structural & Molecular Biology 31 (10), pp. 1625 - 1639 (2024)

Fleischmann, L. S.; Nemes, K.; Glaser, S.; Kouroukli, A. G.; Boros , M.; Bens, S.; Dahlum, S.; Kretzmer, H.; Oyen, F.; Gerss, J. et al.; Hasselblatt, M.; Frühwald, M. C.; Siebert, R.: Constitutional mosaicism of pathogenic variants in SMARCB1 in a subset of patients with sporadic rhabdoid tumors. Neuro-Oncology: official journal of the World Federation of Neuro-Oncology, Article noae188 (2024)

Naderi, J.; Magalhães, A. P.; Kibar, G.; Stik, G.; Zhang, Y.; Mackowiak, S.; Wieler, H. M.; Rossi, F.; Buschow, R.; Christou-Kent, M. et al.; Alcoverro-Bertran, M.; Graf, T.; Vingron, M.; Hnisz, D.: An activity-specificity trade-off encoded in human transcription factors. Nature Cell Biology 26 (8), pp. 1309 - 1321 (2024)

Roessner, P. M.; Seufert, I.; Chapaprieta, V.; Jayabalan, R.; Briesch, H.; Massoni-Badosa, R.; Boskovic, P.; Benckendorff, J. ....; Kretzmer, H.; Naake, T. e. a.: T-bet suppresses proliferation of malignant B cells in chronic lymphocytic leukemia. Blood 144 (5), pp. 510 - 524 (2024)

Batki, J.; Hetzel, S.; Schifferl, D.; Bolondi, A.; Walther, M.; Wittler, L.; Grosswendt, S.; Herrmann, B. G.; Meissner, A.: Extraembryonic gut endoderm cells undergo programmed cell death during development. Nature Cell Biology 26 (6), pp. 868 - 877 (2024)

van der Weijden, V. A.; Bulut-Karslioglu, A.: Embryos burn fat in standby. Trends in Cell Biology 34 (9), pp. 700 - 702 (2024)

Bolondi, A.; Law, B. K.; Kretzmer, H.; Gassaloglu, S. I.; Buschow, R.; Riemenschneider, C.; Yang, D.; Walther, M.; Veenvliet, J. V.; Meissner, A. et al.; Smith, Z. D.; Chan, M. M.: Reconstructing axial progenitor field dynamics in mouse stem cell-derived embryoids. Developmental Cell 59 (12), pp. 1489 - 1505 (2024)

Borisova, E.; Newman, A. G.; Couce Iglesias, M.; Dannenberg, R.; Schaub, T.; Qin, B.; Rusanova, A.; Brockmann, M.; Koch, J.; Daniels, M. et al.; Turko, P.; Jahn, O.; Kaplan, D. R.; Rosário, M.; Iwawaki, T.; Spahn, C. M. T.; Rosenmund, C.; Meierhofer, D.; Kraushar, M. L.; Tarabykin, V.; Ambrozkiewicz, M. C.: Protein translation rate determines neocortical neuron fate. Nature Communications 15 (1), Article 4879 (2024)

Sato, N. S.; Rosa , V. S.; Makhlouf, A.; Kretzmer, H.; Sampath Kumar, A.; Grosswendt, S.; Mattei, A. L.; Courbot, O.; Wolf, S.; Boulanger, J. et al.; Langevin, F.; Wiacek, M.; Karpinski, D.; Elosegui-Artola, A.; Meissner, A.; Zernicka-Goetz , M.; Shahbazi, M. N.: Basal delamination during mouse gastrulation primes pluripotent cells for differentiation. Developmental Cell 59 (10), pp. 1252 - 1268 (2024)

Iyer, D. P.; Moyon, L.; Ringeling, F. R.; Cheng, C.-Y.; Wittler, L.; Canzar, S.; Marsico, A.; Bulut-Karslioglu, A.: Combinatorial microRNA activity is essential for the transition of pluripotent cells from proliferation into dormancy. Genome Research 34 (4), p. 589 - 589 (2024)

Seffouh, A.; Nikolay, R.; Ortega, J.: Critical steps in the assembly process of the bacterial 50S ribosomal subunit. Nucleic Acids Research 52 (8), pp. 4111 - 4123 (2024)

Elkabetz, Y.: It takes two to expand the cortex. Nature Cell Biology 26 (5), pp. 667 - 669 (2024)

Rrustemi, T.; Meyer, K.; Roske , Y.; Uyar , B.; Akalin, A.; Imami, K.; Ishihama, Y.; Daumke , O.; Selbach, M.: Pathogenic mutations of human phosphorylation sites affect protein-protein interactions. Nature Communications 15 (1), Article 3146 (2024)

Maier, H. B.; Neyazi, A.; Bundies, G. L.; Meyer-Bockenkamp, F.; Bleich, S.; Pathak, H.; Ziert, Y.; Neuhaus, B.; Müller, F.-J.; Pollmann, I. e. a. et al.; Frieling, H.: Validation of the predictive value of BDNF -87 methylation for antidepressant treatment success in severely depressed patients-a randomized rater-blinded trial. Trials 25 (1), Article 247 (2024)

Bastian, L.; Beder, T.; Barz, M. J.; Bendig, S.; Bartsch, L.; Walter, W.; Wolgast , N.; Brändl, B.; Rohrandt, C.; Hansen, B.-T. et al.; Hartmann, A. M.; Iben, K.; das Gupta, D.; Denker, M.; Zimmermann , J.; Wittig, M.; Chitadze, G.; Neumann, M.; Schneller, F.; Fiedler, W.; Steffen, B.; Stelljes, M.; Faul, C.; Schwartz, S.; Müller, F.-J.; Cario, G.; Harder, L.; Haferlach, C.; Pfeifer, H.; Gökbuget, N.; Brüggemann, M.; Baldus, C. D.: Developmental trajectories and cooperating genomic events define molecular subtypes of BCR::ABL1-positive ALL. Blood 143 (14), pp. 1391 - 1398 (2024)