Software

PROmiRNA -  a program for miRNA promoter prediction based on NGS data and semi-supervised learning.

Developed by Annalisa Marsico link to downloadable version

 

ssHMM -  a program for finding sequence-structure motifs from a set of RNA sequences using HMMs and Gibbs sampling. Optimized to work with CLIP-seq data

Developed by David Heller Github link to downloadable version

PureCLIP - a statistical model for calling RBP-RNA binding sites from single nucleotide resolution CLIP-seq data based on HMMs and generalized linear models

Developed by Sabrina Krakau  Github link to downloadable version