Giegerich, R.; Brazma, A.; Ukkonen, E.; Vingron, M.; Jonassen,, I.: The BREW workshop series: a stimulating experience in PhD education. Briefings in Bioinformatics 9 (3), pp. 250 - 253 (2008)

Pape, U. J.; Rahmann, S.; Vingron, M.: Natural similarity measures between position frequency matrices with an application to clustering. Bioinformatics 24 (3), pp. 350 - 357 (2008)

Arndt, P. F.; Vingron, M.: The Otto Warburg International Summer School and Workshop on Networks and Regulation. BMC Bioinformatics 8 (Suppl) (6), p. S1 - S1 (2007)

Zemojtel, T.; Penzkofer, T.; Schultz, J.; Dandekar, T.; Badge, R.; Vingron, M.: Exonization of active mouse L1s: a driver of transcriptome evolution? BMC Genomics 8, p. e392 - e392 (2007)

Grossmann, S.; Bauer, S.; Robinson, P. N.; Vingron, M.: Improved detection of overrepresentation of Gene-Ontology annotations with parent child analysis. Bioinformatics 23 (22), pp. 3024 - 3031 (2007)

Bais, A. S.; Grossmann, S.; Vingron, M.: Incorporating evolution of transcription factor binding sites into annotated alignments. Journal of Bioscience 32 (Suppl. 1), pp. 841 - 850 (2007)

Chung, H.-R.; Kostka, D.; Vingron, M.: A physical model for tiling array analysis. Bioinformatics 23 (13), pp. i80 - i86 (2007)

Messer, P. W.; Bundschuh, R.; Vingron, M.; Arndt, P. F.: Effects of Long-Range Correlations in DNA on Sequence Alignment Score Statistics. Journal of Computational Biology: A Journal of Computational Molecular Cell Biology 14 (5), pp. 655 - 668 (2007)

Bais, A. S.; Grossmann, S.; Vingron, M.: Simultaneous alignment and annotation of cis-regulatory regions. Bioinformatics 23 (2), pp. e44 - e49 (2007)

Roider, H. G.; Kanhere, A.; Manke, T.; Vingron, M.: Predicting transcription factor affinities to DNA from a biophysical model. Bioinformatics 23 (2), pp. 134 - 141 (2007)

Kaluza, P.; Ipsen, M.; Vingron, M.; Mikhailov, A. S.: Design and statistical properties of robust functional networks: A model study of biological signal transduction. Physical Review: E, Statistical, Nonlinear and Soft Matter Physics E75, 015101 (2007)

Dieterich, C.; Franz, M. W.; Vingron, M.: Developments in CORG: a gene-centric comparative genomics resource. Nucleic Acids Research 35 (Database issue), pp. D32 - D35 (2007)

Manke, T.; Demetrius, L.; Vingron, M.: An entropic characterization of protein interaction networks and cellular robustness. Interface: Journal of the Royal Society 11 (3), pp. 843 - 850 (2006)

Zemojtel, T.; Fröhlich, A.; Palmieri, M. C.; Kolanczyk, M.; Mikula, I.; Wyrwicz, L. S.; Wanker, E. E.; Mundlos, S.; Vingron, M.; Martasek, P. et al.; Durner, J.: Plant nitric oxide synthase: a never-ending story? Trends in Plant Science 11 (11), pp. 524 - 525 (2006)

Staub, E.; Mackowiak, S.; Vingron, M.: An inventory of yeast proteins that are associated with nucleoli and ribosomal components. Genome Biology: Biology for the Post-Genomic Era 7 (10), p. R98 - R98 (2006)

Dohm, J. C.; Vingron, M.; Staub, E.: Horizontal Gene Transfer in Aminoacyl-tRNA Synthetases Including Leucine-Specific Subtypes. Journal of Molecular Evolution 63 (4), pp. 437 - 447 (2006)

Yeang, C.-H.; Vingron, M.: A joint model of regulatory and metabolic networks. BMC Bioinformatics 7, p. 332 - 332 (2006)

Steinhoff, C.; Vingron, M.: Review: Normalization and Quantification of Differential Expression. Briefings in Bioinformatics 7 (2), pp. 166 - 177 (2006)

Luz, H.; Vingron, M.: Family specific rates of protein evolution. Bioinformatics 10, pp. 1166 - 1171 (2006)

Pape, U. J.; Grossmann, S.; Hammer, S.; Sperling, S.; Vingron, M.: A new statistical model to select target sequences bound by transcription factors. Genome Informatics 17 (1), pp. 134 - 140 (2006)