Journal Article (228)
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Journal Article
20, 20:227 (2019)
CRUP: a comprehensive framework to predict condition-specific regulatory units. Genome Biology: Biology for the Post-Genomic Era 42.
Journal Article
35 (17), pp. 2907 - 2915 (2019)
SVIM: Structural Variant Identification using Mapped Long Reads. Bioinformatics 43.
Journal Article
26 (8), pp. 846 - 865 (2019)
DNA Motif Match Statistics Without Poisson Approximation. Journal of Computational Biology 44.
Journal Article
51 (8), pp. 1263 - 1271 (2019)
Functional dissection of the Sox9-Kcnj2 locus identifies nonessential and instructive roles of TAD architecture. Nature Genetics 45.
Journal Article
178 (1), e29, pp. 242 - 260 (2019)
The Translational Landscape of the Human Heart. Cell 46.
Journal Article
2019, 528877 (2019)
Preformed Chromatin Topology Assists Transcriptional Robustness of Shh during Limb Development. bioRxiv (Preprint Server) 47.
Journal Article
15 (5), e8339 (2019)
Linking aberrant chromatin features in chronic lymphocytic leukemia to transcription factor networks. Molecular Systems Biology 48.
Journal Article
20, 157 (2019)
Predicting enhancers in mammalian genomes using supervised hidden Markov models. BMC Bioinformatics 49.
Journal Article
35 (6), pp. 1009 - 1017 (2019)
The Distance Precision Matrix: computing networks from non-linear relationships. Bioinformatics 50.
Journal Article
21 (3), pp. 305 - 310 (2019)
Serial genomic inversions induce tissue-specific architectural stripes, gene misexpression and congenital malformations. Nature Cell Biology 51.
Journal Article
23 (6), pp. 900 - 904 (2018)
Esrrb Unlocks Silenced Enhancers for Reprogramming to Naive Pluripotency - Correction. Cell Stem Cell 52.
Journal Article
16 (1), 138 (2018)
Classifying human promoters by occupancy patterns identifies recurring sequence elements, combinatorial binding, and spatial interactions. BMC Biology 53.
Journal Article
14 (11), e1007793 (2018)
Synthetic STARR-seq reveals how DNA shape and sequence modulate transcriptional output and noise. PLoS Genetics 54.
Journal Article
50 (10), pp. 1463 - 1473 (2018)
Dynamic 3D chromatin architecture determines enhancer specificity and morphogenetic identity in limb development. Nature Genetics 55.
Journal Article
24 (10), pp. 2784 - 2794 (2018)
Dynamics of Transcription Regulation in Human Bone Marrow Myeloid Differentiation to Mature Blood Neutrophils. Cell Reports 56.
Journal Article
14 (8), e1006372 (2018)
coTRaCTE predicts co-occurring transcription factors within cell-type specific enhancers. PLoS Computational Biology 57.
Journal Article
23 (2), pp. 266 - 275 (2018)
Esrrb Unlocks Silenced Enhancers for Reprogramming to Naive Pluripotency. Cell Stem Cell 58.
Journal Article
10 (1), 10:55 (2018)
Epigenomic profiling of non-small cell lung cancer xenografts uncover LRP12 DNA methylation as predictive biomarker for carboplatin resistance. Genome Medicine 59.
Journal Article
50 (5), pp. 662 - 667 (2018)
Polymer physics predicts the effects of structural variants on chromatin architecture. Nature Genetics 60.
Journal Article
46 (6), pp. 2868 - 2882 (2018)
Genomic dissection of enhancers uncovers principles of combinatorial regulation and dynamic wiring of enhancer-promoter contacts. Nucleic Acids Research (London)