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Enhanced cortical neural stem cell identity through short SMAD and WNT inhibition in human cerebral organoids facilitates emergence of outer radial glial cells. Nature Cell Biology 22.
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Deep learning identifies and quantifies recombination hotspot determinants. Bioinformatics 23.
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434 (11), 167525 (2022)
Visualizing Cluster-specific Genes from Single-cell Transcriptomics Data Using Association Plots. Journal of Molecular Biology 24.
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TADA – a Machine Learning Tool for Functional Annotation based Prioritisation of Putative Pathogenic CNVs. Genome Biology 25.
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Effect of imputation on gene network reconstruction from single-cell RNA-seq data. Patterns 26.
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Assessing genome-wide dynamic changes in enhancer activity during early mESC differentiation by FAIRE-STARR-seq. Nucleic Acids Research (London) 27.
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RIF1 and KAP1 differentially regulate the choice of inactive versus active X chromosomes. The EMBO Journal 28.
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Quantifying the tissue-specific regulatory information within enhancer DNA sequences. NAR: genomics and bioinformatics 29.
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Position effects at the FGF8 locus are associated with femoral hypoplasia. The American Journal of Human Genetics 30.
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Anisotropic expansion of hepatocyte lumina enforced by apical bulkheads. The Journal of Cell Biology: JCB 31.
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A trans locus causes a ribosomopathy in hypertrophic hearts that affects mRNA translation in a protein length-dependent fashion. Genome Biology 32.
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Conserved DNA sequence features underlie pervasive RNA polymerase pausing. Nucleic Acids Research (London) 33.
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Computing Leapfrog Regularization Paths with Applications to Large-Scale K-mer Logistic Regression. Journal of Computational Biology 34.
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Non-coding deletions identify Maenli lncRNA as a limb-specific En1 regulator. Nature (2021)
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SVIM-asm: structural variant detection from haploid and diploid genome assemblies. Bioinformatics 36.
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370 (6513), pp. 208 - 214 (2020)
The mole genome reveals regulatory rearrangements associated with adaptive intersexuality. Science 37.
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Hi-C Identifies Complex Genomic Rearrangements and TAD-Shuffling in Developmental Diseases. The American Journal of Human Genetics 38.
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ModHMM: A Modular Supra-Bayesian Genome Segmentation Method. Journal of Computational Biology 40.
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Single-Cell Analysis Uncovers a Vast Diversity in Intracellular Viral Defective Interfering RNA Content Affecting the Large Cell-to-Cell Heterogeneity in Influenza A Virus Replication. Viruses