Dieterich, C.; Rahmann, S.; Vingron, M.: Functional inference from non-random distributions of conserved predicted transcription factor binding sites. Proceedings Twelfth International Conference on Intelligent Systems for Molecular Biology/Third European Conference on Computational Biology, Glasgow, UK, July 31, 2004 - August 04, 2004. Bioinformatics 20 (Suppl.), pp. i109 - i115 (2004)

Meinel, T.; Vingron, M.; Krause, A.: The SYSTERS protein family database: taxon-related protein family size distributions and singleton frequencies. In: Proceedings of the German Conference on Bioinformatics (GCB '03), pp. 103 - 108 (Eds. Mewes, H.-W.; Frishman, D.; Heun, V.; Kramer, S.). German Conference on Bioinformatics, Neuherberg/Garching near Munich, October 12, 2003 - October 14, 2003. (2003)

Heber, S.; Stoye, J.; Frohme, M.; Hoheisel, J.; Vingron, M.: Resampling Methods in Physical Mapping. In: Classification, Automation, and New Media, pp. 437 - 444. Proceedings of the 24th Annual Conference of the Gesellschaft für Klassifikation, University of Passau, March 15, 2000 - March 17, 2000. Springer-Verlag, Heidelberg (2002)

Huber, W.; von Heydebreck, A.; Gunawan, B.; Vingron, M.; Füzesi, L.; Poustka, A.; Sültmann, H.: Transcription profiling of renal cell carcinoma. Annual Meeting of the German Society for Pathology, Wien, April 03, 2002 - April 06, 2002., (2002)

Meinel, T.; Krause, A.; Stoye, J.; Schmidt, A.; Luz, H.; Vingron, M.: The SYSTERS Protein Family Webserver. In: European Conference on Computational Biology 2002 (ECCB 2002) in conjunction with the German Conference on Bioinformatics 2002 (GCB 2002), p. / - /. European Conference on Computational Biology 2002 (ECCB 2002), Congress Centrum Saar, Saarbrücken, October 06, 2002 - October 09, 2002. (2002)

von Heydebreck, A.; Huber, W.; Poustka, A.; Vingron, M.: Variance stabilization and robust normalization for microarray gene expression data. In: Proceedings in Computational Statistics, pp. 623 - 628 (Eds. Härdle, W.; Rönz, B.). COMPSTAT 2002 - Proceedings in Computational Statistics - 15th Symposium, Berlin, August 24, 2002 - August 28, 2002. Physika Verlag, Heidelberg (2002)

Moeinzadeh, M.; Yang, J.; Vingron, M.: Haplotype reconstruction for polyploid organisms. BREW 2015: Bioinformatics Research and Education Workshop, University of Tartu, Tartu, Estonia (2015)

Moeinzadeh, M.; Yang, J.; Vingron, M.: Haplotype reconstruction for sweet potato (Ipomoea Batatas [L.] Lam). 19. International Conference on Research in Computational Molecular Biology (RECOMB 2015), Warsaw (2015)

Zehnder, T.: Computational Approaches for the Prediction of Gene Regulatory Elements and the Analysis of their Evolutionary Conservation. Dissertation (2020)

Steiger, E.: Efficient Sparse-Group Bayesian Feature Selection for Gene Network Reconstruction. Dissertation, Freie Universität, Berlin (2018)

Heinrich, V.: Aspects of Quality Control for Next Generation Sequencing Data in Medical Genetics. Dissertation, vi, 137, XXVII pp pp., Freie Universität, Berlin (2017)

Sliwa, P.: Heuristic Approaches To Conditional Independence Test Using Partial Distance Correlation. Master (2020)

Despang, A.; Schöpflin, R.; Franke, M.; Ali, S.; Jerkovic, I.; Paliou, C.; Chan, W.-L.; Timmermann, B.; Wittler, L.; Vingron, M. et al.; Mundlos, S.; Ibrahim, D. M.: Functional dissection of TADs reveals non-essential and instructive roles in regulating gene expression, bioRxiv (Preprint Server) 2019, (2019)

Huber, W.; von Heydebreck, A.; Vingron, M.: Error models for microarray intensities, (2004)

Ringel, A.; Szabo, Q.; Chiariello, A. M.; Chudzik, K.; Schöpflin, R.; Rothe, P.; Mattei, A. L.; Zehnder, T.; Harnett, D.; Laupert, V. et al.; Bianco, S.; Hetzel, S.; Phan, M.; Schindler, M.; Ibrahim, D. M.; Paliou, C.; Esposito, A.; Prada-Medina, C. A.; Haas, S.; Giere, P.; Vingron, M.; Wittler, L.; Meissner, A.; Nicodemi, M.; Cavalli, G.; Bantignies, F.; Mundlos, S.; Robson, M.: Promoter repression and 3D-restructuring resolves divergent developmental gene expression in TADs. (2021)

Baranasic, D.; Hörtenhuber, M.; Balwierz, P.; Zehnder, T.; Mukarram, A. K.; Nepal, C.; Varnai, C.; Hadzhiev, Y.; Jimenez- Gonzalez, A.; Li, N. et al.; Wragg, J.; D’Orazio, F.; Díaz, N.; Hernández- Rodríguez, B.; Chen, Z.; Stoiber, M.; Dong, M.; Stevens, I.; Ross, S. E.; Eagle, A.; Martin, R.; Obasaju, P.; Rastegar, S.; McGarvey, A. C.; Kopp, W.; Chambers, E.; Wang, D.; Kim, H. R.; Acemel, R. D.; Naranjo, S.; Lapinski, M.; Chong, V.; Mathavan, S.; Peers, B.; Sauka-Spengler, T.; Vingron, M.; Carninci, P.; Ohler, U.; Lacadie, S. A.; Burgess, S.; Winata, C.; van Eeden, F.; Vaquerizas, J. M.; Gómez-Skarmeta, J. L.; Onichtchouk, D.; Brown, B. J.; Bogdanovic, O.; Westerfield, M.; Wardle, F. C.; Daub, C. O.; Lenhard, B.; Müller, F.: Integrated annotation and analysis of genomic features reveal new types of functional elements and large-scale epigenetic phenomena in the developing zebrafish. (2021)

Lienhard, M.; van den Beucken, T.; Timmermann, B.; Hochradel, M.; Boerno, S.; Caiment, F.; Vingron, M.; Herwig, R.: Long-read transcriptome sequencing analysis with IsoTools. (2021)