Manke, T.; Bringas, R.; Vingron, M.: Correlating protein-DNA and protein-protein interaction networks. Journal of Molecular Biology 333 (1), pp. 75 - 85 (2003)

Haas, S. A.; Hild, M.; Wright, A. P. H.; Hain, T.; Talibi, D.; Vingron, M.: Genome-scale design of PCR primers and long oligomers for DNA microarrays. Nucleic Acids Research 31 (19), pp. 5576 - 5581 (2003)

Kaynak, B.; von Heydebreck, A.; Mebas, S.; Seelow, D.; Vogel, J.; Sperling, H.-P.; Pregla, R.; Alexi-Meskishvili, V.; Hetzer, R.; Lange, P. E. et al.; Vingron, M.; Lehrach, H.; Sperling, S.: A genome-wide transcriptional fingerprint of normal and malformed human hearts. Circulation 107, pp. 2467 - 2474 (2003)

Beißbarth, T.; Borisevich, I.; Hörlein, A.; Kenzelmann, M.; Hergenhahn, M.; Klewe-Nebenius, A.; Klären, R.; Korn, B.; Schmid, W.; Vingron, M. et al.; Schütz, G.: Analysis of CREM-dependent gene expression during mouse spermatogenesis. Molecular and Cellular Endocrinology 212 (1-2), pp. 29 - 39 (2003)

Schmidt, H. A.; Petzold, E.; Vingron, M.; von Haeseler, A.: Molecular phylogenetics: parallelized parameter estimation and quartet puzzling. Special Issue on High-Performance Computational Biology, pp. 719 - 727 (2003)

Dieterich, C.; Herwig, R.; Vingron, M.: Exploring potential target genes of signaling pathways by predicting conserved transcription factor binding sites. Bioinformatics 19 (Suppl. 2), pp. ii50 - ii56 (2003)

Panopoulou, G.; Hennig, S.; Groth, D.; Krause, A.; Poustka, A. J.; Herwig, R.; Vingron, M.; Lehrach, H.: New evidence for genome-wide duplications at the origin of vertebrates using an amphioxus gene set and completed animal genomes. Genome Research 13 (6), pp. 1056 - 1066 (2003)

Kaynak, B.; von Heydebreck, A.; Mebus, S.; Seelow, D.; Hennig, S.; Vogel, J.; Sperling, H.-P.; Pregla, R.; Alexi-Meskishvili, V.; Hetzer, R. et al.; Lange, P. E.; Vingron, M.; Lehrach, H.; Sperling, S.: Genome-wide array analysis of normal and malformed human hearts. Circulation 107 (19), pp. 2467 - 2474 (2003)

Huber, W.; von Heydebreck, A.; Sültmann, H.; Poustka, A.; Vingron, M.: Parameter estimation for the calibration and variance stabilization of microarray data. Statistical Applications in Genetics and Molecular Biology 2 (1), p. article 3 - article 3 (2003)

Schwikowski, B.; Vingron, M.: Weighted sequence graphs: boosting iterated dynamic programming using locally suboptimal solutions. Discrete Applied Mathematics 127 (1), pp. 95 - 117 (2003)

Kriventseva, E. V.; Koch, I.; Apweiler, R.; Vingron, M.; Bork, P.; Gelfand, M. S.; Sunyaev, S.: Increase of functional diversity by alternative splicing. Trends in Genetics 19 (3), pp. 124 - 128 (2003)

Wieczorek, G.; Steinhoff, C.; Schulz, R.; Scheller, M.; Vingron, M.; Ropers, H. H.; Nuber, U. A.: Gene expression profile of mouse bone marrow stromal cells determined by cDNA microarray analysis. European Journal of Cell Biology 82 (Suppl. 53), p. 41 - 41 (2003)

Dieterich, C.; Wang, H.; Rateitschak, K.; Luz, H.; Vingron, M.: CORG: a database for COmparative Regulatory Genomics. Nucleic Acids Research 31 (1), pp. 55 - 57 (2003)

Markowetz, F.; Edler, L.; Vingron, M.: Support vector machines for protein fold class prediction. Biometrical Journal 45 (3), pp. 377 - 389 (2003)

Rahmann, S.; Müller, T.; Vingron, M.: On the power of profiles for transcription factor binding site detection. Statistical Applications in Genetics and Molecular Biology 2 (1), p. article 7 - article 7 (2003)

Boué, S.; Vingron, M.; Kriventseva, E.; Koch, I.: Theoretical analysis of alternative splice forms using computational methods. Proceedings of the European Conference on Computational Biology (ECCB 2002), pp. S65 - S73 (2002)

Nicodéme, P.; Doerks, D.; Vingron, M.: Proteome analysis based on motif statistics. Proceedings of the European Conference on Computational Biology (ECCB 2002), pp. S161 - S171 (2002)

Huber, W.; von Heydebreck, A.; Sültmann, H.; Poustka, A.; Vingron, M.: Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, pp. S96 - S104 (2002)

Dieterich, C.; Cusack, B.; Wang, H.; Rateitschak, K.; Krause, A.; Vingron, M.: Annotating regulatory DNA based on man-mouse genomic comparison. Proceedings of the European Conference on Computational Biology (ECCB 2002), pp. S84 - S90 (2002)

Scheideler, M.; Schlaich, N. L.; Fellenberg, K.; Beissbarth, T.; Hauser, N. C.; Vingron, M.; Slusarenko, A. J.; Hoheisel, J. D.: Monitoring the Switch from Housekeeping to Pathogen Defense Metabolism in Arabidopsis thaliana Using cDNA Arrays. Journal of Biological Chemistry 277 (12), pp. 10555 - 10561 (2002)