Sueltmann, H.; von Heydebreck, A.; Huber, W.; Kuner, R.; Buness, A.; Vogt, M.; Gunawan, B.; Vingron, M.; Fuezesi, L.; Poustka, A.: Gene Expression in Kidney Cancer Is Associated with Cytogenetic Abnormalities, Metastasis Formation, and Patient Survival. Clinical Cancer Research 11 (2 Pt 1), pp. 646 - 655 (2005)

Philippar, U.; Schratt, G.; Dieterich, C.; Müller, J. M.; Galgóczy, P.; Engel, F. B.; Keating, M. T.; Gertler, F.; Schüle, R.; Vingron, M. et al.; Nordheim, A.: The SRF target gene Fhl2 antagonizes RhoA/MAL-dependent activation of SRF. Molecular Cell 16 (12), pp. 867 - 880 (2004)

Gupta, S.; Zink, D.; Korn, B.; Vingron, M.; Haas, S. A.: Strengths and weaknesses of EST-based prediction of tissue-specific alternative splicing. BMC Genomics 5, p. 72 - 72 (2004)

Rateitschak, K.; Mueller, T.; Vingron, M.: Annotating significant pairs of transcription factor binding sites in regulatory DNA. Special Issue: Ontology Workshop Tokyo 2003, p. 0040 - 0040 (2004)

Gupta, S.; Zink, D.; Korn, B.; Vingron, M.; Haas, S. A.: Genome wide identification and classification of alternative splicing based on EST data. Bioinformatics 20 (16), pp. 2579 - 2585 (2004)

Crass, T.; Antes, I.; Basekow, R.; Bork, P.; Buning, C.; Christensen, M.; Claußen, H.; Ebeling, C.; Ernst, P.; Gailus-Durner, V. et al.; Glatting, K.-H.; Gohla, R.; Gößling, F.; Grote, K.; Heidtke, K.; Herrmann, A.; O'Keeffe, S.; Kießlich, O.; Kolibal, S.; Korbel, J. O.; Lengauer, T.; Liebich, I.; van der Linden, M.; Luz, H.; Meissner, K.; von Mering, C.; Mevissen, H.-T.; Mewes, H.-W.; Michael, H.; Mokrejs, M.; Müller, T.; Pospisil, H.; Rarey, M.; Reich, J. G.; Schneider, R.; Schomburg, D.; Schulze-Kremer, S.; Schwarzer, K.; Sommer, I.; Springstubbe, S.; Suhai, S.; Thoppae, G.; Vingron, M.; Warfsmann, J.; Werner, T.; Wetzler, D.; Wingender, E.; Zimmer, R.: The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources. Bioinformatics 20 (2), pp. 268 - 270 (2004)

Hermjakob, H.; Montecchi-Palazzi, L.; Lewington, C.; Mudali, S.; Kerrien, S.; Orchard, S.; Vingron, M.; Roechert, B.; Roepstorff, P.; Valencia, A. et al.; Margalit, H.; Armstrong, J.; Bairoch, A.; Cesareni, G.; Sherman, D.; Apweller, R.: IntAct: an open source molecular interaction database. Nucleic Acids Research 32 (Sp. Iss. SI), pp. D452 - D455 (2004)

von Heydebreck, A.; Sperling, S.; Kaynak, B.; Lehrach, H.; Vingron, M.: Genexpressionsanalyse komplexer klinischer Phänotypen mittels cDNS-Arrays - Gene Expression Profiling of Complex Clinical Phenotypes using cDNA-Arrays. it - Information Technology 46 (1), pp. 26 - 30 (2004)

Xue, Y. T.; Haas, S.; Brino, L.; Gusnanto, A.; Riemers, M.; Talibi, D.; Vingron, M.; Ekwall, K.; Wright, A. P. H.: A DNA microarray for fission yeast: minimal changes in global gene expression after temperature shift. Yeast 21 (1), pp. 25 - 39 (2004)

Hild, M.; Beckmann, B.; Haas, S. A.; Koch, B.; Solovyev, V.; Busold, C.; Fellenberg, K.; Boutros, M.; Vingron, M.; Sauer, F. et al.; Hoheisel, J. D.; Paro, R.: An integrated gene annotation and transcriptional profiling approach towards the full gene content of the Drosophila genome. Genome Biology 5 (1), p. R3 - R3 (2003)

Manke, T.; Bringas, R.; Vingron, M.: Correlating protein-DNA and protein-protein interaction networks. Journal of Molecular Biology 333 (1), pp. 75 - 85 (2003)

Haas, S. A.; Hild, M.; Wright, A. P. H.; Hain, T.; Talibi, D.; Vingron, M.: Genome-scale design of PCR primers and long oligomers for DNA microarrays. Nucleic Acids Research 31 (19), pp. 5576 - 5581 (2003)

Kaynak, B.; von Heydebreck, A.; Mebas, S.; Seelow, D.; Vogel, J.; Sperling, H.-P.; Pregla, R.; Alexi-Meskishvili, V.; Hetzer, R.; Lange, P. E. et al.; Vingron, M.; Lehrach, H.; Sperling, S.: A genome-wide transcriptional fingerprint of normal and malformed human hearts. Circulation 107, pp. 2467 - 2474 (2003)

Beißbarth, T.; Borisevich, I.; Hörlein, A.; Kenzelmann, M.; Hergenhahn, M.; Klewe-Nebenius, A.; Klären, R.; Korn, B.; Schmid, W.; Vingron, M. et al.; Schütz, G.: Analysis of CREM-dependent gene expression during mouse spermatogenesis. Molecular and Cellular Endocrinology 212 (1-2), pp. 29 - 39 (2003)

Schmidt, H. A.; Petzold, E.; Vingron, M.; von Haeseler, A.: Molecular phylogenetics: parallelized parameter estimation and quartet puzzling. Special Issue on High-Performance Computational Biology, pp. 719 - 727 (2003)

Dieterich, C.; Herwig, R.; Vingron, M.: Exploring potential target genes of signaling pathways by predicting conserved transcription factor binding sites. Bioinformatics 19 (Suppl. 2), pp. ii50 - ii56 (2003)

Panopoulou, G.; Hennig, S.; Groth, D.; Krause, A.; Poustka, A. J.; Herwig, R.; Vingron, M.; Lehrach, H.: New evidence for genome-wide duplications at the origin of vertebrates using an amphioxus gene set and completed animal genomes. Genome Research 13 (6), pp. 1056 - 1066 (2003)

Kaynak, B.; von Heydebreck, A.; Mebus, S.; Seelow, D.; Hennig, S.; Vogel, J.; Sperling, H.-P.; Pregla, R.; Alexi-Meskishvili, V.; Hetzer, R. et al.; Lange, P. E.; Vingron, M.; Lehrach, H.; Sperling, S.: Genome-wide array analysis of normal and malformed human hearts. Circulation 107 (19), pp. 2467 - 2474 (2003)

Huber, W.; von Heydebreck, A.; Sültmann, H.; Poustka, A.; Vingron, M.: Parameter estimation for the calibration and variance stabilization of microarray data. Statistical Applications in Genetics and Molecular Biology 2 (1), p. article 3 - article 3 (2003)

Schwikowski, B.; Vingron, M.: Weighted sequence graphs: boosting iterated dynamic programming using locally suboptimal solutions. Discrete Applied Mathematics 127 (1), pp. 95 - 117 (2003)