Schwikowski, B.; Vingron, M.: Weighted sequence graphs: boosting iterated dynamic programming using locally suboptimal solutions. Discrete Applied Mathematics 127 (1), pp. 95 - 117 (2003)

Kriventseva, E. V.; Koch, I.; Apweiler, R.; Vingron, M.; Bork, P.; Gelfand, M. S.; Sunyaev, S.: Increase of functional diversity by alternative splicing. Trends in Genetics 19 (3), pp. 124 - 128 (2003)

Wieczorek, G.; Steinhoff, C.; Schulz, R.; Scheller, M.; Vingron, M.; Ropers, H. H.; Nuber, U. A.: Gene expression profile of mouse bone marrow stromal cells determined by cDNA microarray analysis. European Journal of Cell Biology 82 (Suppl. 53), p. 41 - 41 (2003)

Dieterich, C.; Wang, H.; Rateitschak, K.; Luz, H.; Vingron, M.: CORG: a database for COmparative Regulatory Genomics. Nucleic Acids Research 31 (1), pp. 55 - 57 (2003)

Markowetz, F.; Edler, L.; Vingron, M.: Support vector machines for protein fold class prediction. Biometrical Journal 45 (3), pp. 377 - 389 (2003)

Rahmann, S.; Müller, T.; Vingron, M.: On the power of profiles for transcription factor binding site detection. Statistical Applications in Genetics and Molecular Biology 2 (1), p. article 7 - article 7 (2003)

Boué, S.; Vingron, M.; Kriventseva, E.; Koch, I.: Theoretical analysis of alternative splice forms using computational methods. Proceedings of the European Conference on Computational Biology (ECCB 2002), pp. S65 - S73 (2002)

Nicodéme, P.; Doerks, D.; Vingron, M.: Proteome analysis based on motif statistics. Proceedings of the European Conference on Computational Biology (ECCB 2002), pp. S161 - S171 (2002)

Huber, W.; von Heydebreck, A.; Sültmann, H.; Poustka, A.; Vingron, M.: Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, pp. S96 - S104 (2002)

Dieterich, C.; Cusack, B.; Wang, H.; Rateitschak, K.; Krause, A.; Vingron, M.: Annotating regulatory DNA based on man-mouse genomic comparison. Proceedings of the European Conference on Computational Biology (ECCB 2002), pp. S84 - S90 (2002)

Scheideler, M.; Schlaich, N. L.; Fellenberg, K.; Beissbarth, T.; Hauser, N. C.; Vingron, M.; Slusarenko, A. J.; Hoheisel, J. D.: Monitoring the Switch from Housekeeping to Pathogen Defense Metabolism in Arabidopsis thaliana Using cDNA Arrays. Journal of Biological Chemistry 277 (12), pp. 10555 - 10561 (2002)

Beckers, J.; Hoheisel, J.; Mewes, W.; Vingron, M.; Hrabé de Angelis, M.: Molecular Phenotyping of Mouse Mutant Resources by RNA Expression Profiling. Current Genomics 3 (3), pp. 121 - 129 (2002)

Fellenberg, K.; Hauser, N. C.; Brors, B.; Hoheisel, J. D.; Vingron, M.: Microarray data warehouse allowing for inclusion of experiment annotations in statistical analysis. Bioinformatics 18 (3), pp. 423 - 433 (2002)

Schmidt, H. A.; Strimmer, K.; Vingron, M.; von Haeseler, A.: TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18 (3), pp. 502 - 504 (2002)

Coward, E.; Haas, S. A.; Vingron, M.: SpliceNest: visualizing gene structure and alternative splicing based on EST clusters. Trends in Genetics 18 (1), pp. 53 - 55 (2002)

Krause, A.; Haas, S. A.; Coward, E.; Vingron, M.: SYSTERS, GeneNest, SpliceNest: exploring sequence space from genome to protein. Nucleic Acids Research 30 (1), pp. 299 - 300 (2002)

Müller, T.; Spang, R.; Vingron, M.: Estimating Amino Acid Substitution Models: A Comparison of Dayhoff's Estimator, the Resolvent Approach and a Maximum Likelihood Method. Molecular Biology and Evolution 19 (1), pp. 8 - 13 (2002)

Meinel, T.; Krause, A.; Luz, H.; Vingron, M.; Staub, E.: The SYSTERS Protein Family Database in 2005.

Schmid, M.; Davison, T. S.; Henz, S. R.; Pape, U. J.; Demar, M.; Vingron, M.; Schoelkopf, B.; Weigel, D.; Lohmann, J. U.: A gene expression map of Arabidopsis development.

Schulz, M. H.; Köhler, S.; Bauer, S.; Vingron, M.; Robinson, P. N.: Exact Score Distribution Computation for Similarity Searches in Ontologies. In: Algorithms in Bioinformatics, pp. 298 - 309 (Eds. Salzberg, S. L.; Warnow, T.). Springer, New York [et al] (2009)