Complete list of publications (2009-2012)

2012

Jones DTW, Jäger N, Kool M, Zichner T, Hutter B, Sultan M, Cho YJ, Pugh TJ, Hovestadt V, Stütz AM, Rausch T, Warnatz HJ, Ryzhova M, Bender S, Sturm D, Pleier S, Cin H, Pfaff E, Sieber L, Wittmann A, Remke M, Witt H, Hutter S, Tzaridis T, Weischenfeldt J, Raeder B, Avci M, Amstislavskiy V,  Zapatka  M,  Weber  UD,  Wang Q,  Lasitschka  B,  Bartholomae  C, Hasselblatt M, Jabado N, Rutkowski S, von Bueren AO, Williamson D, Clifford  SC,  McCabe  MG,  Collins VP,  Wolf  S,  Wiemann  S,  Lehrach H,  Brors  B,  Scheurlen  O,  Felsberg J, Reifenberger G, Northcott PA, Taylor MD, Meyerson M, Pomeroy SL, Yaspo ML Korbel JO, Korshunov A, Eils R, Pfister SM, Lichter P (2012). ICGC PedBrain: Dissecting the genomic complexity underlying medulloblastoma, Nature, in press

Sultan M, Dökel S, Amstislavskiy V, Wuttig D, Sültmann H, Lehrach H, Yaspo ML (2012). A simple strand- specific RNA-Seq library preparation protocol combining the Illumina TruSeq RNA and the dUTP methods. Biochem   Biophys   Res    Commun 422(4):643-6

2011

Diez-Roux G, Banfi S, Sultan M, Geffers L, Anand S, Rozado D, Magen A, Canidio E, Pagani M, Peluso I, Lin- Marq N, Koch M, Bilio M, Cantiello I, Verde R, De Masi C, Bianchi SA, Cicchini J, Perroud E, Mehmeti S, Dagand E, Schrinner S, Nürnberger A, Schmidt K, Metz K, Zwingmann C, Brieske N, Springer C, Hernandez AM, Herzog S, Grabbe F, Sieverding C, Fischer B, Schrader K, Brockmeyer M, Dettmer S, Helbig C, Alunni V, Battaini  MA,  Mura  C,  Henrichsen CN, Garcia-Lopez R, Echevarria D, Puelles E, Garcia-Calero E, Kruse S, Uhr M, Kauck C, Feng G, Milyaev N, Ong CK, Kumar L, Lam M, Semple CA, Gyenesei A, Mundlos S, Radelof U, Lehrach H, Sarmientos P, Reymond A, Davidson DR, Dollé P, Antonarakis SE, Yaspo ML, Martinez S, Baldock RA, Eichele G, Ballabio A (2011). A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol 9(1):e1000582

Schmidt M, von Kalle C, Ast V, Lawerenz C, Eils J, Kabbe R, Benes V, van Sluis P, Koster J, Volckmann R, Shih D, Betts MJ, Russell RB, Coco S, Tonini JP, Schüller U, Hans V, Graf N, Kim YJ, Monoranu C, Roggendorf W Unterberg A, Herold-Mende C, Milde T, Kulozik AE, von Deimling A, Witt O, Maass E, Rössle, J, Ebinger M, Schuhmann MU, Frühwald MC, Salton M, Elkon R, Borodina T, Davydov  A,  Yaspo  ML,  Halperin E, Shiloh Y (2011). Matrin 3 binds and   stabilizes   mRNA.   PLoS   One 6(8):e23882

Warnatz   HJ,   Schmidt   D,   Manke T, Piccini I, Sultan M, Borodina T, Balzereit D, Wruck W, Soldatov A, Vingron M, Lehrach H, Yaspo ML (2011). The BTB and CNC homology 1 (BACH1) target genes are involved in the oxidative stress response and in control of the cell cycle. J Biol Chem 286(26):23521-32

2010

Cheng  X,  Guerasimova  A,  Manke T, Rosenstiel P, Haas S, Warnatz HJ, Querfurth R,  Nietfeld W, Vanhecke D, Lehrach H, Yaspo ML, Janitz M (2010). Screening of human gene promoter activities using transfected- cell arrays. Gene 450(1-2):48-54

Richard H, Schulz MH, Sultan M, Nürnberger A, Schrinner S, Balzereit D,  Dagand  E,  Rasche  A,  Lehrach H, Vingron M, Haas SA, Yaspo ML (2010). Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments. Nucleic Acids Res 38(10): e112

Warnatz HJ, Querfurth R, Guerasimova  A,   Cheng   X,   Haas SA, Hufton AL, Manke T, Vanhecke D,  Nietfeld  W,  Vingron  M,  Janitz M, Lehrach H, Yaspo ML (2010). Functional analysis and identification of cis-regulatory elements of human chromosome 21 gene promoters. Nucleic Acids Res 38(18):6112-23

PhD Thesis

Hans-Jörg Warnatz: Systematic cloning    and    functional    analysis of the proteins encoded on human chromosome 21. Freie Universität Berlin, 2009

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