Journal Article (82)
81.
Journal Article
49 (7), pp. 3856 - 3875 (2021)
Androgen and glucocorticoid receptor direct distinct transcriptional programs by receptor-specific and shared DNA binding sites. Nucleic Acids Research (London) 82.
Journal Article
371 (6524), eabd1673 (2021)
Steps toward translocation-independent RNA polymerase inactivation by terminator ATPase ρ. Science Book Chapter (1)
83.
Book Chapter
2351, pp. 41 - 65 (Ed. Borggrefe, T.). Humana, New York, NY (2021)
Illuminating enhancer transcription at nucleotide resolution with native elongating transcript sequencing (NET-Seq). In: Enhancers and Promoters - Methods and Protocols (Methods in Molecular Biology ; 2351), Vol. Conference Paper (1)
84.
Conference Paper
Detection of markers for discrete phenotypes. In: CSBio2021, pp. 64 - 68. CSBio2021: The 12th International Conference on Computational Systems-Biology and Bioinformatics, Virtual Event, October 14, 2021 - October 15, 2021. Association for Computing Machinery, New York, NY (2021)
Thesis - PhD (9)
85.
Thesis - PhD
Integration of multi-omics data with graph convolutional networks to identify cancer-associated genes. Dissertation, ix, 190 pp. (2021)
86.
Thesis - PhD
Investigating the Genomic Effects of Glucocorticoid Receptor Activation: An Analysis of Transcriptional Memory and Mechanisms That Direct Divergent Genomic Occupancy of Related Transcription Factors. Dissertation, xxi, 93 pp. (2021)
87.
Thesis - PhD
Using interpretable machine learning to understand gene silencing dynamics during X-chromosome inactivation. Dissertation, vii, 159 pp. (2021)
88.
Thesis - PhD
Genome-wide Determination Of Splicing Efficiency And Dynamics From RNA-Seq Data. Dissertation, ix, 100 pp. (2021)
89.
Thesis - PhD
Explainable deep learning models for biological sequence classification. Dissertation, vii, 119 pp. (2021)
90.
Thesis - PhD
Network Propagation with Node Core for Genotype-Phenotype Associations and Module Identification. Dissertation, xii, 161 pp. (2021)
91.
Thesis - PhD
Computational Approaches for the Prediction of Gene Regulatory Elements and the Analysis of their Evolutionary Conservation. Dissertation, vii, 155 pp. (2021)
92.
Thesis - PhD
Towards accurate and efficient live cell imaging data analysis. Dissertation, xii, 119 pp. (2021)
93.
Thesis - PhD
Structural variant calling using third-generation sequencing data. Dissertation, xiii, 139 pp. (2021)
Review Article (4)
94.
Review Article
CLCN4-Related Neurodevelopmental Disorder. (2021)
95.
Review Article
Molecular Regulation of Paused Pluripotency in Early Mammalian Embryos and Stem Cells. (2021)
96.
Review Article
3D or Not 3D: Shaping the Genome during Development. (2021)
97.
Review Article
Nuclear speckles: dynamic hubs of gene expression regulation. (2021)
Preprint (4)
98.
Preprint
Promoter repression and 3D-restructuring resolves divergent developmental gene expression in TADs. (2021)
99.
Preprint
Integrated annotation and analysis of genomic features reveal new types of functional elements and large-scale epigenetic phenomena in the developing zebrafish. (2021)
100.
Preprint
Long-read transcriptome sequencing analysis with IsoTools. (2021)